Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3480 TTGGATGCCCAGGCTGTGCTCCTAACTGGTGGCGCCGCCGCCCCCTTCCCCTCAGACAAAATCGATTTGACGGTGTTGATGGAGGAGATGGAGTCCGTTGATGTACCCTCCGTCTTTATCTGTCCAATCTCATTAGAGCCTATGCGACACCCCGTCACCCTTTGCACAGGTCAGACCTACGACAAATCCAACATTCTCAAATGGTTGTCTCTGGGTCATAATACATGCCCCACAACAATGCAAGAGCTTTGGGACCATTCCCTCACGCCCAATACCACTCTCACCCAATTAATTCACACTTGGTTCTTGCACAACTACTTTTCCATGAAGAAGCAGTTCCAGGATGTGCAAGCAAGAGCCGTGGATCTGTTGGAGACGCTCAAGAAGGTGAAGGGTCAAGCCAGAGTACAAGCTCTTCGAGATCTCAGGCAGATTGTCACAGCCCATGCTTCCACGAGGAGAACAATCGCAGACAATGGTGGGCTTTCTTTAATTCCTTCTTTACTAGGTCCTTTCACTTCCCACTCGGTTGGGTCGGAAGCCATTGGGATTCTTGTGAATTTGGATATGAATTCAGAGTTGAAGAAAAACCTGATGCATCCCGCCAAGATATCCTTGTTGGTTGATATAATGAACGAGGGAACCATTGAGACCAAGATGAACTGTGCCAAATTGATTGAGACATTGTTGAGGAAAGGGAATGAGTGGGAGACAGAGATAGTGATGTCAAGCTTGAGTCTTTTGGTGGGATTACTGAGGCTGGTGAGGGATAAGAAACATCCAAACGGGGTCTTAACTGGACTTGTATTACTCAAGACCATATGTTCCCAGAGCCAGgaatcagtgagaagctccaTGATTAGCGTGGGAGCAGTTGGGCAGTTAATAGAGGTTTTGCCCAGTTTAAACAACGAGTGCTTAGAGATAGCTCTGTATATTTTGGAGGTATTGTCAACGGTTGCTGAGGGAAGAATGGCGTTGAAAGAGTGCCCAAACATCATACCCAATGTGGTCAAGTTAATGATGAGGGTGTCGGAGAGTAGCACTCAGTTTGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCTCCTGAAGAATGTGCTTCCCAGGCTGTGGAGGCTGGTTTGGCGCCAAAGCTTCTGCTTGTAATTCAGAGTGGTTGTAACCCTGTGTTGAAGCAGATGTCTACTGATTTCCTAAAACTCTGTAGTCTCAATTACTCCTCCACTAGTCTCTTGATTTCAAACTGTATGCTCACTAAAACAATACAATGA 1275 0.4573 LDAQAVLLTGGAAAPFPSDKIDLTVLMEEMESVDVPSVFICPISLEPMRHPVTLCTGQTYDKSNILKWLSLGHNTCPTTMQELWDHSLTPNTTLTQLIHTWFLHNYFSMKKQFQDVQARAVDLLETLKKVKGQARVQALRDLRQIVTAHASTRRTIADNGGLSLIPSLLGPFTSHSVGSEAIGILVNLDMNSELKKNLMHPAKISLLVDIMNEGTIETKMNCAKLIETLLRKGNEWETEIVMSSLSLLVGLLRLVRDKKHPNGVLTGLVLLKTICSQSQESVRSSMISVGAVGQLIEVLPSLNNECLEIALYILEVLSTVAEGRMALKECPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTDFLKLCSLNYSSTSLLISNCMLTKTIQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3480 424 Gene3D - 110 417 IPR011989 -
Sto9g3480 424 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Sto9g3480 424 PANTHER WDSAM1 PROTEIN 17 423 IPR045185 GO:0061630
Sto9g3480 424 CDD RING-Ubox_PUB 39 81 IPR045210 -
Sto9g3480 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 17 423 - -
Sto9g3480 424 Pfam U-box domain 35 104 IPR003613 GO:0004842|GO:0016567
Sto9g3480 424 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Sto9g3480 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 109 IPR013083 -
Sto9g3480 424 SUPERFAMILY ARM repeat 123 252 IPR016024 -
Sto9g3480 424 SUPERFAMILY RING/U-box 28 105 - -
Sto9g3480 424 SUPERFAMILY ARM repeat 247 412 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3480 Sto-Chr9 34133863 34135137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3480 18 424 U-box Gene Family AT3G49810 59.705 6.75e-174 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3480 - - gmx:100808281 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3480 9 34133863 34135137 Sto9g3480 9 34133863 34135137 ECH