Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3427 ATGGCTGGATTGGCACCAGAAGGATCACAATTTGATGCTCGTCAATTTGATGCTAAGATGACTGAATTACTTGGAACTGAAGGGCAAGACTTCTTCACTAGTTATGATGAAGTTTATGACAGCTTTGATGCCATGGGATTGCAGGAGAACCTTCTGAGGGGTATTTATGCATATGGTTTTGAGAAACCCTCTGCAATTCAGCAAAGGGGGATTGTTCCTTTCTGCAAGGGACTTGATGTAATTCAGCAAGCCCAATCTGGAACTGGGAAAACTGCAACCTTCTGCTCTGGAATTTTGCAGCAGCTTGATTATGGCTTAGTTGAATGCCAGGCACTAGTTCTTGCTCCCACTCGTGAACTTGCACAGCAAATTGAGAAAGTCATGCGAGCACTAGGTGACTATCTTGGAGTGAAGGTTCATGCTTGTGTGGGTGGGACTAGTGTTCGTGAAGATCAACGCATACTCTCTAGTGGAGTCCATGTTGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTGCGGAGACAATCTCTGCGTCCTGACTATATTAAGATGTTTGTATTGGATGAGGCAGATGAGATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCGCCAAAAATCCAGGTAGGTGTTTTCTCTGCCACTATGCCACCTGAGGCCTTGGAGATCACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTGGTAAAGCACAAGATGCGGAGTCGCGATCACACCGTTtcagccactcatggagatatGGATCAAAACACAAGGGATATCATCATGCGGGAATTCCGTTCTGGTTCCTCTCGTGTTTTAATCACCACAGATCTCTTGGCCCGTGGTATTGACGTCCAGCAAGTCTCACTTGTGATTAACTATGATCTACCAACTCAGCCGGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGTTTTGGAAGAAAAGGTGTTGCTATCAATTTTGTGACCAAGGATGATGACAGGATGCTGTTTGacattcaaaagttttataatgTGGTGATTGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTTTGA 1086 0.4383 MAGLAPEGSQFDARQFDAKMTELLGTEGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKHKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQKFYNVVIEELPANVADLL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3427 361 CDD SF2_C_DEAD 243 331 - -
Sto9g3427 361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Sto9g3427 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 357 IPR027417 -
Sto9g3427 361 SMART helicmild6 241 322 IPR001650 -
Sto9g3427 361 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Sto9g3427 361 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 202 361 IPR001650 -
Sto9g3427 361 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 245 361 - -
Sto9g3427 361 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 245 - -
Sto9g3427 361 Pfam Helicase conserved C-terminal domain 239 322 IPR001650 -
Sto9g3427 361 PANTHER RNA HELICASE 245 361 - -
Sto9g3427 361 PANTHER RNA HELICASE 23 245 - -
Sto9g3427 361 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Sto9g3427 361 Gene3D - 30 246 IPR027417 -
Sto9g3427 361 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676|GO:0005524
Sto9g3427 361 CDD DEADc_EIF4A 44 242 - -
Sto9g3427 361 SMART ultradead3 59 255 IPR014001 -
Sto9g3427 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 244 IPR027417 -
Sto9g3427 361 Gene3D - 247 361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3427 Sto-Chr9 33836792 33839054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3427 1 361 Eukaryotic Initiation Factors Gene Family AT1G72730 76.570 0.0 636