Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3407 atGGATTCAGAGAGGAAGAGTGAGGGGAGAAAGAAGGAACCTTGCAGAGGAGCGTGGACGCCTGAAGAAGATCACAAACTGGTTCAAGTCATAGAATTACACGGTTTAAATCGATGTGGCAAGAGTTGCAGGTTGAGATGGTTAAATTATCTGAGACCCAATATCAAGAGAGGCAATATATCTGACCAAGAGGAGGACTTAATACTCAGGCTTCATAAACTTCTAGGCAATAGGTGGTCGTTGATAGCTGGAAGGCTCCCAGGTCGAACAGATAATGAGATTAAGAATTACTGGAACTCTCATTTGAGCAAGAAGATAAATCCAAGGAAACAAAACAAAGATTTAGAAACAGAGTCCAAGGAGATAGGTACAGCACTAGACATGGTTGCTGCTGGTAGTAATAAAGAACCGGCTACCTCTAAGGTGGTGGAGGCCTCAAAGTCTAGTGTTAGCTTTATTGAAGGCGATGGCGATGGCGATGGCTTCTTTCATTGTGGGAGTGAAGGGCCAATTAATTTGGAATGGGTGAGTAGATTTCTTGAAATGGACGAAACTTGCTTTGGATTCACTGATATGTGA 579 0.4283 MDSERKSEGRKKEPCRGAWTPEEDHKLVQVIELHGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKINPRKQNKDLETESKEIGTALDMVAAGSNKEPATSKVVEASKSSVSFIEGDGDGDGFFHCGSEGPINLEWVSRFLEMDETCFGFTDM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3407 192 Gene3D - 15 56 - -
Sto9g3407 192 Pfam Myb-like DNA-binding domain 16 51 IPR001005 -
Sto9g3407 192 Pfam Myb-like DNA-binding domain 57 102 IPR001005 -
Sto9g3407 192 ProSiteProfiles Myb-like domain profile. 11 51 IPR001005 -
Sto9g3407 192 SUPERFAMILY Homeodomain-like 16 98 IPR009057 -
Sto9g3407 192 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Sto9g3407 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 51 IPR017930 -
Sto9g3407 192 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 5 189 - -
Sto9g3407 192 CDD SANT 61 102 IPR001005 -
Sto9g3407 192 Gene3D - 60 125 - -
Sto9g3407 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Sto9g3407 192 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 189 - -
Sto9g3407 192 SMART sant 56 104 IPR001005 -
Sto9g3407 192 SMART sant 15 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3407 Sto-Chr9 33736616 33737457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3407 16 192 MYB Transcription Factor Family AT5G52600 46.500 3.40e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto9g3407 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3407 K09422 - pop:7492298 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3407 9 33736616 33737457 Sto9g3407 9 33736616 33737457 ECH