Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3395 ATGTCCTCAGCCTCCAAAGAACAAACCCCACAGTCATCGGAAACTGAATCTTCAGGGCCGACCTCGGATTGGCCACAATCTATAGTTGACGGAATGAAATCCAAACTGCAGTTTTCATCAGGTTTGCATAACCCTTTATCGGTCAAAGAGTTATCGCAACTGAAGCTCAAGAAATCATTGGGTTTGAGAGAGgaaCGGCGTCGTCTTCTTGGCTCACAGCACAGGCAAAACCTACCTTTGCGCCGCTCCACCTCTGTGACTCTGAGACTGGGAAACAGGTGCGCCATTGAAACTCCTTACATCTTCCCCATGGCGGATGTGATGGTGATTAACGATATTGAGGCAACAGCCTCACGGCTCGGACTAGATCTTTCTACCGTCAATCTGGATTCGGTTCAACTGCCTCCGGGCGATGATTTTGGCATCGTCAGTGATGATGAGGATATTTACGAAGAGGAAAATCTTGAATTTGATTCTGGATTTGGTAATATTATAGTTGTGGATAATCTCCCAGTTGTTCCTCAGGAGAAGTTTGAGAAGCTTGAAGGTGTAATTCGTAAGATTTATAGTCAGATTGGTGTTATTAAGGAGGATGGCCTGTGGATGCCTGTTGATCCTGGTTCTGGGAAAAGTTTAGGTTACTGCTTAATTGAGTATAATACCCCACAGGAAGCTGAACTTGCTAAAGAGAAGACGGATGGATACAAGTTGGATCGTGCACATGTTTTTAAAGTGAACATGTTTGATGACCTTGACAGGTTTAAGAAAGTTCCAAATGAGTGGGCTCCCCCTGAAACAAATCCATATGAACCAGGGgaaaaTCTTCAACATTGGCTTACTGATGCAAAAGCCCGTGATCAGTTTGTGATTCGTGCTGGTTCTGATACTGAAGTTTTATGGAATGATGCTAGACATGTGAAGCCTGATCCCGTTTATAAGCGTACTTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTCTTGGCACATACTTGGCAACGGTTCATAGGCAGGGGGCTGCTGTTTGGGGTGGTGCTGCAACCTTCAATCGCCTTATGCGATATGCTCATCCTCagGTAAAACTTATTGATTTTTCTCCTGGTGAGAAGTATTTGGTAACTTACAGCAGCCACGAACCAAGTAATCCCCGAGATGCTAATAGGGTTGTCATAAATATATTTGATGTGAGGACTGGTAAAATGATGAGAGATTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTACTGGAGGTGTCACAGGGGTGTCGTGGCCTGTTTTCAGATGGGGTGGCGGGAGAGATGATAAATACTTTGCAAGAATggggaaaaatataatttctgtATATGAGACAGATACCTTTTCTCTTGTTGACAAAAAGTCCTTAAAGGTTGAAAATGTAATGGATTTGTGCTGGTCTCCTACTGATCCAATTCTTGCTCTCTTTGTTCCGGAGATGGGTGGTGGGAATCAGCCTGCTAGGGTAAGTCTGGTTCAAATCCCAAGTAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGACTACCTTGCAGTTAAGGTAGATCGTTATACTAAAACCAAAAAAAGCACTTACACAGGCTTTGAGCTTTTCCGTATAAAGGAACGTGACATACCCATTGAAGTTCTGGAGCTTGAAAACAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAGGGCCATAGGTTTGCAGTTATTCATGGTGATAACCCGAAGCCTGATGTTAGCTTTTACTCTATGCGGACAGCTCAGAACACTGGCCGGGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCTCCTACTGGTCGCTACATTGTACTTGCGGGATTGAAAGGTTTCAATGGGCAGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCAACTGCTGAGCATTTTATGGCAACCGATATTGAATGGGACCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAACGGATTCAACATATGGTCTTTCAATGGCAAGCTTCTCTATCGGATACTGAAAGATCACTTCTTCCAGTTCTTATGGCGACCAAGGCCACCCTCTTTCCTGAGTGtggagaaagaggaagagatTGGAAAGAACTTAAAGAAGTACAATAAGAAATATGAAGCCGAAGATCAGGATGTATCATTGCTACTGAGTGAGCAGGAGCGAGAGAAGCGTAGGATGGTGAAAGAAGAGTGGGACAAGTGGGTCAATCAATGGAAGCAGTTGCATGAACAAGAGAAGCTGGAGAGACAGAATCTTAGAGACGGAGAAGCCAGTGATGAAGAAGAGGAATATGAGGCAAAGGACATAGAGGTTGAGGAAGTTGTGGATGTAACAGAGGAGGTTCTTCCCTTCGAATATGGGCAAGAGTGA 2469 0.4322 MSSASKEQTPQSSETESSGPTSDWPQSIVDGMKSKLQFSSGLHNPLSVKELSQLKLKKSLGLREERRRLLGSQHRQNLPLRRSTSVTLRLGNRCAIETPYIFPMADVMVINDIEATASRLGLDLSTVNLDSVQLPPGDDFGIVSDDEDIYEEENLEFDSGFGNIIVVDNLPVVPQEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPGSGKSLGYCLIEYNTPQEAELAKEKTDGYKLDRAHVFKVNMFDDLDRFKKVPNEWAPPETNPYEPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHVKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAATFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKMMRDFKGSADDFAIGGTGGVTGVSWPVFRWGGGRDDKYFARMGKNIISVYETDTFSLVDKKSLKVENVMDLCWSPTDPILALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSFYSMRTAQNTGRVSKLTTLKGKQANALFWSPTGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSVEKEEEIGKNLKKYNKKYEAEDQDVSLLLSEQEREKRRMVKEEWDKWVNQWKQLHEQEKLERQNLRDGEASDEEEEYEAKDIEVEEVVDVTEEVLPFEYGQE 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3395 822 Gene3D - 162 246 IPR012677 -
Sto9g3395 822 MobiDBLite consensus disorder prediction 1 30 - -
Sto9g3395 822 PIRSF Transl_init_eIF3b 109 816 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto9g3395 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 238 IPR000504 GO:0003723
Sto9g3395 822 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 152 816 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto9g3395 822 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 108 815 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Sto9g3395 822 SUPERFAMILY DPP6 N-terminal domain-like 321 705 - -
Sto9g3395 822 MobiDBLite consensus disorder prediction 780 799 - -
Sto9g3395 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 250 IPR000504 GO:0003723
Sto9g3395 822 Gene3D - 271 482 IPR015943 GO:0005515
Sto9g3395 822 PANTHER BNACNNG51870D PROTEIN 108 815 - -
Sto9g3395 822 SUPERFAMILY RNA-binding domain, RBD 161 250 IPR035979 GO:0003676
Sto9g3395 822 CDD RRM_eIF3B 162 246 IPR034363 -
Sto9g3395 822 Pfam Eukaryotic translation initiation factor eIF2A 509 709 IPR013979 -
Sto9g3395 822 Gene3D - 518 734 IPR015943 GO:0005515
Sto9g3395 822 SMART rrm1_1 164 246 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3395 Sto-Chr9 33649651 33655742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3395 108 815 Eukaryotic Initiation Factors Gene Family AT5G27640 78.561 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3395 K03253 - gmx:100817394 1328.92