Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3394 ATGGCCTCTGCCTCTGCTAATAACAATATTAACAATAGTAATGGAAAGGATGAGGGTATAATGAAATATAAGGGTGTGAGGAAGCGAAAATGGGGGAAATGGGTGTGTGAGATCAGACTTCCTAATAGCCGTGATCGCATATGGTTAGGCTCTTATGATTCTCCCGACAAGGCTGCTCGTGCCTTCGATGCTGCCCTTTTCTGTCTACGTGGCTCTCGTGCCAATTTTAATTTCCCCGACACTCCTCTCCActttcttcatcatcattacCATCTCCAATCTCTCACTCATGATCAAATTCGAGAGATTGCTGTTACGTTTGCCCACCAGGCGCcgccctcctcctcctctctgCCGCCGCAACAGCAGGAGGAGCAACCGCCGCTCCATACAGAATCTGAGACGACAGACGAGGTTGCTATTGATTGGTCATATTTGAATGAGGCTATTAATGGCTCTGATTATAGTGGCTTCTATTCTGAGCTTGATGACCTACATGTACACCACTTCCAATCTCCTTCTGCTGTGAATCAAGATAACAAGAGGGAAATCATTGCATTGGCAGATTCTGGTCCATCATTATTCACACTCGGCACGATGTTCTCAGCAGATATGAGCTTTACAAACTCTTTGAGTTCTGTGAAGCTGCAATGCTCACTATATGGCACTTCATACCTGGCAGGGCCAGAACTTTCGATAAAACACTCTTCTTATTGGACCAGACCAGAAAAGAAATTGAGAATCAAGAAGAGTCATGAATAA 762 0.4239 MASASANNNINNSNGKDEGIMKYKGVRKRKWGKWVCEIRLPNSRDRIWLGSYDSPDKAARAFDAALFCLRGSRANFNFPDTPLHFLHHHYHLQSLTHDQIREIAVTFAHQAPPSSSSLPPQQQEEQPPLHTESETTDEVAIDWSYLNEAINGSDYSGFYSELDDLHVHHFQSPSAVNQDNKREIIALADSGPSLFTLGTMFSADMSFTNSLSSVKLQCSLYGTSYLAGPELSIKHSSYWTRPEKKLRIKKSHE 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3394 253 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Sto9g3394 253 MobiDBLite consensus disorder prediction 111 134 - -
Sto9g3394 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 168 - -
Sto9g3394 253 MobiDBLite consensus disorder prediction 111 129 - -
Sto9g3394 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 13 168 - -
Sto9g3394 253 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Sto9g3394 253 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Sto9g3394 253 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Sto9g3394 253 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Sto9g3394 253 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Sto9g3394 253 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Sto9g3394 253 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3394 Sto-Chr9 33637816 33645248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3394 22 116 AP2-EREBP Transcription Factor Family AT1G19210 65.263 2.40e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto9g3394 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3394 - - aip:107622034 149.828