Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3378 ATGGCCTCCAAGCTCTGTGACTCCTGCAAATCCGCCTCCGCCACCCTCTTCTGCCGCGCCGACTCCGCCTTCCTCTGCCTTGGCTGCGACTCCAAAGTCCATGCCGCCAACAAGCTCGCCTCCCGCCACGCGCGCGTCTGGGTCTGCGAGGTCTGCGAGCAGGCTCCTGCACACGTCACCTGCAAGGCTGACGCCGCTGCTCTCTGCGTCACTTGCGACCGTGATATCCACTCTGCCAACCCACTCGCCCGCCGCCACGAGCGCGTCCCCGTCACTCCCTTCTACGACCCCGTCCACTCCGTCGGCGTACCGTCCGCCGCTGCTGCTATCAACTTCCTTGACGACCGTTACTTCTCCGACGCCGATGGAGATGCTGATGTCAGCAGGGAAGAGGCGGAAGCCGCTTCCTGGTTGCTCCCCAATCCCAAGGCCGTGGAGAGTCCGGATCTGAATTCCGGCGAGTACGTGTTCCCTGAAATGGAGCCATGCCTAGATCTGGATTTCGGGCCCGTGGATCCGAAGGTGGAAGCGCAGGAGCAGAACAGTTCCGGCACAGACGGTGTCGTTCCGGTGCAGAGCAAGAGCGCACAGGTTCCTTCCCTGAACGAACACTACTATGACGTGGACTTATCCGGCTCCAAGAATTTCGCATACGGTTATAACAGCAGCCAGTGTCTGAGCCAGAGTgtaTCGTCGTCGTCGATGGAAGTAGGGGTGGTGCCAGATGGGAATGCGATATCCAACGGTTACAGTAAGACGATGATGGGGGGTGAGAATCAGACGGTGCAGATATCAGCAGCAGATAGGGAAGCGAGAGTGTTGAGGTAtagagagaagaggaagaaccGCAAGTTTGAGAAGACCATTCGCTACGCTTCCAGAAAAGCCTATGCGGAAACAAGGCCTAGGATCAAAGGTAGGTTCGCCAAGCGATCCGAGACGGATCGTTTCGGAGGATACGGCGTCGTACCCAGCTGTTGA 981 0.5759 MASKLCDSCKSASATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDPVHSVGVPSAAAAINFLDDRYFSDADGDADVSREEAEAASWLLPNPKAVESPDLNSGEYVFPEMEPCLDLDFGPVDPKVEAQEQNSSGTDGVVPVQSKSAQVPSLNEHYYDVDLSGSKNFAYGYNSSQCLSQSVSSSSMEVGVVPDGNAISNGYSKTMMGGENQTVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSETDRFGGYGVVPSC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3378 326 Pfam CCT motif 269 311 IPR010402 GO:0005515
Sto9g3378 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 325 IPR045281 GO:0009909
Sto9g3378 326 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Sto9g3378 326 CDD Bbox1_BBX-like 5 48 - -
Sto9g3378 326 SMART bboxneu5 49 91 IPR000315 GO:0008270
Sto9g3378 326 SMART bboxneu5 1 48 IPR000315 GO:0008270
Sto9g3378 326 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Sto9g3378 326 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Sto9g3378 326 ProSiteProfiles CCT domain profile. 269 311 IPR010402 GO:0005515
Sto9g3378 326 CDD Bbox1_BBX-like 48 91 - -
Sto9g3378 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 325 - -
Sto9g3378 326 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3378 Sto-Chr9 33558942 33560032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3378 1 325 C2C2-CO-like Transcription Factor Family AT5G24930 62.534 3.31e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto9g3378 zf-B_box 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3378 - - tcc:18587662 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3378 9 33558942 33560032 Sto9g3378 9 33558942 33560032 ECH