Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3347 ATGACCATGTGGTCGGGCTACACTTTGCCAACACATCAAGCCCAAATGGCATTTGCCAGAGGGGGGGTGAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATCTTACGTGTTGAATTAAGCAGCAAGCAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCGCAGACAGCTGCTGGAATCATCGGGAAAGTTGCAATTAACTGGCTTTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGGATAGATAGGTTTAATGCAAAAAATTCTTCGagattttgttttcttctttctacTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCCGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAATAAGGTGATGATTTATAGGCTCATAACAAGAGGAAGCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTGGAACATCTAGTTGTCGGGAGGCTAAAAGCTCAAAATATTAACCAGGAAGAATTGGATGATATCATAAGGTATGGCTCCAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGAAAATCGCGTCAAATTCATTATGATGATGCTGCCATAGATAGATTGCTGGATCGTGAACAAATTGATGATGAAGAGGCTACaatggatgaagaagaagatggatttTTGAAGGCCTTTAAGGTGgcaaattttgaatatattgaTGAAGTTGAGGCTGCAGCAGAGGAGGCAGCAAGAAAGAGAGCTATGGAGAACACAACTACTGTGGCAAATACAGAAAGAACAAAATACTGGGAGGAGTTATTAGGAGACAGATATGAAGTGCATAAAGTTGAAGAGTTGAATGCCTTGGGCAAAGGGAAGCGGAGCCGTCAAAAGCAGATGGTTTCTGTTGAGGAGGATGATCTTGCTGGTTTGGAAGATGTAAGCTCTGATGGTGATGACAATTATGAAGTGGAGCTTACTGACGGTGATGCAAATTCAACTGGAATTATTTCTAGAAGGCCTTACAAAAAGAGAGCCCGTGCTGCAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAATCATTTCGAGTGCGTGGTTTTAATCAGAGTCAGAGAgcagcatttgtgcaaattttgaTGAGAGTCTGTTACAGGTTTGGGGCTGGTGATTATGATTGGAAGGAGTTTGCATCCCGCATGAAACAGAAGACTTATGAAGAAATCAGAGAGTATGGAATTCTTTTTCTAACTCACATATCCGAAGAAGTAACTGAGGCCCCTACCTTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAGTACAAGATGTACTTATTAGGATTGCAGTTCTCTCCTTGATAACGAAGAAAGTTAAGTTTGCATCAGAAAATCCTGGGACTCCACTGTTTTCAGATGATATCTTATTTCGCTATCCAAGTTTGAAGGGTACAAAGATATGGAAGGAGGAGCACGATTTAGTGTTGCTGCGTGCTGTGTTGAagCATGGTTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATCTGTCAGGAGTTGAACCTTCCCTTTATAAATTTACCAGTACCAGGACAAGTTAGCTCTCAGGCACAAAATGGTGCAAGTTTGTCAAATGCAGAAGTGCCCAGCAATCAATGTAGGGAAAATGGTGGAAGTGAAACACCAGCTGATGGTGCACTTGGTTCTGGTGATGTTAGGAACCAAACACACTTATATCAAGACTCTTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGgttgaatttataaaaaagagGGTGCTCCTCTTGGAAAAAGGGATCAATGTCGAGTATCAGCAAGAATGCTTAGGTGAAATGAAAGCAAATGAAGTCACAAATGATGGACTTAAATATGAAGCAAAGCCTACAAATATTCCTAGTTTTAAATCAGGGGAGACAGACAGTCAAATGCTTGATCAACTGCCTCAAGTAGAAGCAATAGCTTCAGATGAGATTTCTCTTGCTGATAGTGATCCAAAACGATTGGAATTGGTTCGGCTTTACAATGAGATGTGCAAAGTTTTGAACGAAAACAGCATGGACTTAATTCCAACATCATTGGCCAGAGAAACAGCAGAAGCGGATGCCGTGAAGAACTTTCCTAAGTTACAAACCATTTGCGAAGACACCAACAGAATTCTAACACCGTCACAGAAAAGCCATCCTACTGAAGAAAAGCCATTAATTCCGGAGAATAAATCAGAGGCTTCACAACAAGGTGAAGTTATGGTTTCTCAAGATGACTGCAAATCCAAATCAGTAGACACTGAGAGGAAAGACGTGTTAATAGACTCtgaacataaaaaagaaagcaGCACTGGCCTGGTCAAAGAGAAAGAAACAACAAGTCCTCTAGAAACGAAGGTTAGTGATATAGAAATGGATGATGCTGACAATGACGCTGAGCTAAATGAAAAGGCAGAGAAATCTGAGCCGGGGGTCATTTAA 2613 0.3938 MTMWSGYTLPTHQAQMAFARGGVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQTAAGIIGKVAINWLYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQIDDEEATMDEEEDGFLKAFKVANFEYIDEVEAAAEEAARKRAMENTTTVANTERTKYWEELLGDRYEVHKVEELNALGKGKRSRQKQMVSVEEDDLAGLEDVSSDGDDNYEVELTDGDANSTGIISRRPYKKRARAADSTEPLPLMEGEGKSFRVRGFNQSQRAAFVQILMRVCYRFGAGDYDWKEFASRMKQKTYEEIREYGILFLTHISEEVTEAPTFSDGVPKEGLRVQDVLIRIAVLSLITKKVKFASENPGTPLFSDDILFRYPSLKGTKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVSSQAQNGASLSNAEVPSNQCRENGGSETPADGALGSGDVRNQTHLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGINVEYQQECLGEMKANEVTNDGLKYEAKPTNIPSFKSGETDSQMLDQLPQVEAIASDEISLADSDPKRLELVRLYNEMCKVLNENSMDLIPTSLARETAEADAVKNFPKLQTICEDTNRILTPSQKSHPTEEKPLIPENKSEASQQGEVMVSQDDCKSKSVDTERKDVLIDSEHKKESSTGLVKEKETTSPLETKVSDIEMDDADNDAELNEKAEKSEPGVI 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3347 870 Pfam CHD subfamily II, DUF1087 276 338 IPR009463 -
Sto9g3347 870 Gene3D - 32 61 IPR027417 -
Sto9g3347 870 Gene3D - 78 257 IPR027417 -
Sto9g3347 870 CDD SF2_C_SNF 79 166 - -
Sto9g3347 870 SMART DUF1086_2 346 508 IPR009462 GO:0003677|GO:0006338
Sto9g3347 870 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 23 66 - -
Sto9g3347 870 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 81 756 - -
Sto9g3347 870 MobiDBLite consensus disorder prediction 764 870 - -
Sto9g3347 870 SMART DUF1087_2 274 341 IPR009463 -
Sto9g3347 870 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 23 206 IPR001650 -
Sto9g3347 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 210 IPR027417 -
Sto9g3347 870 MobiDBLite consensus disorder prediction 575 597 - -
Sto9g3347 870 Gene3D - 475 645 - -
Sto9g3347 870 Pfam Helicase conserved C-terminal domain 82 155 IPR001650 -
Sto9g3347 870 MobiDBLite consensus disorder prediction 803 849 - -
Sto9g3347 870 MobiDBLite consensus disorder prediction 787 801 - -
Sto9g3347 870 SMART helicmild6 49 155 IPR001650 -
Sto9g3347 870 Pfam CHD subfamily II, SANT-like domain 369 505 IPR009462 GO:0003677|GO:0006338
Sto9g3347 870 MobiDBLite consensus disorder prediction 575 611 - -
Sto9g3347 870 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED 81 756 - -
Sto9g3347 870 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED 23 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3347 Sto-Chr9 33344982 33356986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3347 81 206 RAD5 or RAD16-like Gene Family AT5G22750 33.333 2.99e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3347 K11643 - gmx:100804203 1170.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0902 5 6052186 6070432 Sto9g3347 9 33344982 33356986 CCT