Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3344 CTGAACGAACCCACAGAACTGAATCTCATAAACTGTTTGGATTCGGAGAGGGAGGGAAGGAAATTAGATTCATCAGAAAAGGGGGGTGGATGTGAAGCTGGAGAGGCAAGAGTTTTCTCTTGCAACTACTGCCAAAGGAAGTTCTACAGTTCACAAGCACTTGGGGGACACCAAAATGCGCATAAGAGAGAGAGGTCAATAGCAAAAAGAGGACAGAGGATAATGGCCTCAGCATCAGCAGCAGCTTTTGGGATTCCTTTTCTGCATAATCATCATCGGTATTCAAGTATGGCTTCTCTACCACTCCATGGTGCTGCTTGTAATAATAAACCTCTTGGAATTCAGGCACACTCCATGATCCACAAGCATGTTTCTTCTAGTTATAATGGGTTTGGGCATCACGGTTGGTCCAGATCACCCCTTATTCATTATCAACAACCCAGAGTAGGGAAGCTAGAGATGCCAAATTTTCACAGGGGCAGTGTAGGTAGGTTTGAGATGGTGGGTTCTGCAGCTAATGAAGAAATCACTGGGTATTTGGTGAGTGGAACTCGTTTCAAGACTAATCAAGAAGAAAGGAAGCACCTTGATTTGTCCCTCAAGCTCTAA 609 0.445 LNEPTELNLINCLDSEREGRKLDSSEKGGGCEAGEARVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQRIMASASAAAFGIPFLHNHHRYSSMASLPLHGAACNNKPLGIQAHSMIHKHVSSSYNGFGHHGWSRSPLIHYQQPRVGKLEMPNFHRGSVGRFEMVGSAANEEITGYLVSGTRFKTNQEERKHLDLSLKL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3344 202 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Sto9g3344 202 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 202 IPR044246 GO:0009788
Sto9g3344 202 SUPERFAMILY beta-beta-alpha zinc fingers 37 66 IPR036236 -
Sto9g3344 202 Gene3D Classic Zinc Finger 20 83 - -
Sto9g3344 202 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Sto9g3344 202 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3344 Sto-Chr9 33326843 33327451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3344 2 202 C2H2 Transcription Factor Family AT5G25160 43.668 9.55e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto9g3344 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3344 - - gmx:100819663 235.343