Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3341 ATGGGGAGAGCACAACAGCGATATCGAGGGGTTCGACAGAGGCATTGGGGTTCTTGGGTATCTGAAATTCGGCACCCTCTCTTGAAGACGAGGATATGGCTTGGTACATTTGAAACGGCGGAAGATGCAGCCAGAGCCTACGACGAAGCAGCCAGGCTCATGTGTGGTCCAAGGGCAAGAACCAATTTCCCTTACAACCCCAATGCCTCTCACTCTTCATCTTCCAAGCTTCTCTCCACAACTTTGACTGCTAAACTCCATAGGTGCTATATGGCTTCCCTTCAAATCACAAGGTCCTCTTCATCATCACACCCTCACACTCACAGACTAATCACTTCACCAAATGCAATGTCCTCAGGCACAAGCACAAGCACAACCACATCATCCTCTGCTTTGCCACACAACGAGCAGGAACCAGAGGCCAAGTGGGTAGTGAATAAGGTCAAAGTGGAAAGTAGTGAGGAATTCAAGCCTCTTGAAGAGGATCACATTGACCAAATGATAGAGGAGCTTCTTGATTACGGCTCCATTGAGCTCAATGTCATGCCACCTCACACTCTCTGA 564 0.4876 MGRAQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASHSSSSKLLSTTLTAKLHRCYMASLQITRSSSSSHPHTHRLITSPNAMSSGTSTSTTTSSSALPHNEQEPEAKWVVNKVKVESSEEFKPLEEDHIDQMIEELLDYGSIELNVMPPHTL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3341 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Sto9g3341 187 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Sto9g3341 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sto9g3341 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Sto9g3341 187 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Sto9g3341 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Sto9g3341 187 MobiDBLite consensus disorder prediction 97 140 - -
Sto9g3341 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 182 - -
Sto9g3341 187 MobiDBLite consensus disorder prediction 97 135 - -
Sto9g3341 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Sto9g3341 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Sto9g3341 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3341 Sto-Chr9 33308417 33309057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3341 1 187 AP2-EREBP Transcription Factor Family AT5G25190 63.830 2.53e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto9g3341 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3341 - - gmx:100819158 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0897 5 6008098 6008721 Sto9g3341 9 33308417 33309057 CCT