Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3340 ATGAGGCAGAACAGGCCTATCCCTTACTGGATCCGCATGAGGACTGACAACACCATCAGgTATAATGCCAAGCGCCGCCATTGGCGTCGCACCAAGCTTGGATTTTGA 108 0.5185 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 35
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3340 35 Pfam Ribosomal L39 protein 1 33 IPR000077 GO:0003735|GO:0005840|GO:0006412
Sto9g3340 35 SUPERFAMILY Ribosomal protein L39e 1 34 IPR023626 -
Sto9g3340 35 ProSitePatterns Ribosomal protein L39e signature. 14 30 IPR020083 GO:0003735|GO:0005840|GO:0006412
Sto9g3340 35 PANTHER - 1 35 - -
Sto9g3340 35 PANTHER RIBOSOMAL PROTEIN L39E 1 35 - -
Sto9g3340 35 Gene3D Ribosomal protein L39e 1 35 IPR023626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3340 Sto-Chr9 33303544 33303735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3340 1 35 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 94.286 4.25e-20 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3340 K02924 - gmx:100306305 81.2629