Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3333 ATGGACCCCGATATAGCCCGTTGGATACTGGAGTATGTACTTCGGAGTTCTCTTCCCGACTCGGACGCCAAAAAAATCTCCGATGTTTTGCCCATTTCTGTTATGGACTCACGGGTAAGGAAAACTATGTTTCTCAGGTCTATTCAGTCTGAGGTGTCTTCGGCCTCAATCACAGAATCCATATTGGATACTTTTGAAATGATCGAGGAGTTAGATAGGGTTGATGGCATTGCAATCACGGAGACAATGAAGCAGGCTTATTGCGCTGTTGCTGTGGAGTGCACTATTAGGTACCTTGACACATCACCTGatgacaacaacaacaaccagCGTTTCTATTCAGAGGCAGTCGAGAGAATCTGGAGGAGTCGGATTAGGCAGATGGAGGCAGCCACAGCATCTGGCGAAGGTAGTGATTTGTGGACGGCTGAGTTGAAAAACTGGGGAGATGAAATAGATGCTGCGTTTTGGGACTCGGAAGTGCATAAGAGGTTAGTGTTCATAAATTCCAGACAAATCGCACTGAGAAAGGTTAGGGTGTATTTGGCAGAAACCTGGCAAATCATGGGGCCGCCTTTTCTGGAGTTAGCAGCTACCATGTTTGAAGTTAATGTAGCATGTCAAAATAGCAATTTGCTGCTCAGAAATAAGCATTCCGCATCCTCGTCGCAACAAGGGGGAGTTAAATTCTTTTGTGACGAAAAAGTGGGCCCAATACAAGCACTTGTCAACGACCCTCTTCCTGATGTATTGTTGAAGTCTGAATTGGCTGAGGAAAGCATTAGTCATGAACCACCTCTTGAAAACCAGAATAGAAATGTTGATGTACCAGAACCAAATAATACTGCCCATACTTGTGAGCAGGGTGGTTCAAAAATTAACTCGCTGGATGGAACACTCAAGAGAAGGAGGAAAGGCAAACGATGGACTTCATTGGAAGAGCAAATGTTACACGATGGTGTAAATAAGTTTGGCAAAGGGAATTGGAAAGCAATCCTTACTTTCTATGATGAGATATTTAAAGAGGCAGGCAGAACTGAAGTTGATTTGAAGGACAAGTGGAGAAACATGAATCGACAATCATACAGGAAGTAG 1095 0.432 MDPDIARWILEYVLRSSLPDSDAKKISDVLPISVMDSRVRKTMFLRSIQSEVSSASITESILDTFEMIEELDRVDGIAITETMKQAYCAVAVECTIRYLDTSPDDNNNNQRFYSEAVERIWRSRIRQMEAATASGEGSDLWTAELKNWGDEIDAAFWDSEVHKRLVFINSRQIALRKVRVYLAETWQIMGPPFLELAATMFEVNVACQNSNLLLRNKHSASSSQQGGVKFFCDEKVGPIQALVNDPLPDVLLKSELAEESISHEPPLENQNRNVDVPEPNNTAHTCEQGGSKINSLDGTLKRRRKGKRWTSLEEQMLHDGVNKFGKGNWKAILTFYDEIFKEAGRTEVDLKDKWRNMNRQSYRK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3333 364 ProSiteProfiles Myb-like domain profile. 301 358 IPR001005 -
Sto9g3333 364 Pfam Myb-like DNA-binding domain 307 357 IPR001005 -
Sto9g3333 364 Gene3D - 298 362 - -
Sto9g3333 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 301 362 IPR017930 -
Sto9g3333 364 PANTHER MYB TRANSCRIPTION FACTOR 299 360 - -
Sto9g3333 364 PANTHER MYB TRANSCRIPTION FACTOR 1 201 - -
Sto9g3333 364 SUPERFAMILY Homeodomain-like 308 362 IPR009057 -
Sto9g3333 364 MobiDBLite consensus disorder prediction 264 295 - -
Sto9g3333 364 CDD SANT_TRF 307 359 - -
Sto9g3333 364 SMART sant 305 360 IPR001005 -
Sto9g3333 364 MobiDBLite consensus disorder prediction 261 296 - -
Sto9g3333 364 PANTHER MYB TRANSCRIPTION FACTOR 299 360 - -
Sto9g3333 364 PANTHER MYB TRANSCRIPTION FACTOR 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3333 Sto-Chr9 33245047 33247416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3333 7 357 Single Myb Histone (SMH) Gene Family AT1G15720 29.268 7.56e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto9g3333 Myb_DNA-binding 8.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3333 - K11111 vvi:100244907 251.521