Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3328 atggGGAAGCCCAGCGGGAAGAAGAGGGATCATGTGGCAGAACACAAGGCAAATGCAAACGGCAAGAGCGTCAAGCCCCCTGAGCGAACCTCCAAAGCTTTTGACGAAGACACAGCAATGTTCATCAACATGTCTCACGACCTTAAGGAAGAAGGAAACAGACTCTTCCAAAAGAAGGATTACGAAGGTGCCGTGTTGAAGTTCGAGAAGGCCCTCAAGCTTCTTCCCAGAAACCACATTGATGTTGCACTCCTCCATACCCATATGGCTTCGTGCCATATGCAAATGGGTCTGGGCGAGTACCCTCAAGCCATCAATCAATGTAATTTGGCCTTACAAGTATCGCCCAGGTACAGCAAAGCTCTCATCAAAAGAGCCAAGTGCTATGAAGAATTGAATCGTTTGGATTTGGCTCTCAGAGATGTGGGCAATGTTGAAGAAAAACCTGTTACAAGAACAGCCAAATTGGTATATGGAGAGGATATAAGGTGGGCACAATTACCTGTGAATTGTAGCCTGAGATTGGTGAGGGATGTCATTAGAGATCGCTTTCCAGGCTTGAAGGGTGTTCTTGTGAAATACAAGGATCAAGATGGTGATTTGGTTACACTCACCACCACTGAAGAACTAAGGTTAGCAGAATCTTCATCACATGTGGTTGATCCAGAGCAAGAACCATGTTACGAAGAAATGAGCAATGAGAATGACTTGGCAAGAGTAGATGATGGTggtaaagagaaaaatgaagggGCTAAGGAGGAAGCCAAGGAAGATGAAGCAAAGAGGATGACTACTGTGGAGGACTGGCTGATTCAGTTTGCTAGGCTGTTCAAGAACCACGTTGGGTTTGATTCTGATTCATATCTGGATCTTCATGAGCTTGGAATGACGCTGTATTCAGAAGCAATGGAGGATACAGTGACGAGTGATGAGGCTCAAGAACTTTTTGAGATTGCTGCGGATAAGTTCCAAGAGATGTCAGCTTTAGCAATGTTCAATTGGGGGAATGTGCACATGTCCAAGGCCAGGAAGAGGGCTTCAATCTCAGAGGAGGCTTCAAATTCTTTCGAGAATATGAAGGCTGCTTATGAGTGGGCACAAAAGGAGTACATGAGAGCCGAAATGAAATACGAGGAATCCCTGAAAATCAAACCAGATTTCTATGAAGGGTATCTTGCACTTGGGCATCAGCAATTTGAGCAAGCGAAGCTGTGCTGGTACTACTTAAATGCATGCAAGAAGGATGATGTAGAAGGTTCGACTTCCGGGGAGGTATTACAACTGTATAACAAGGCAGAGGATAGCATGGAGAAGGGGATGCTGATGTGGGAGGAGGTTGAGGAGCAGAGACTAAATGGACTGTCCAAAGCAGAGAAATATAAAGCGCAGTTGCAGAAGGTGGGGTTGGATGGTGTTTTCAAGGATGTTTCTTTCGAAGAAGCTACAGAGCAGGCTGAAAATATGAGGTCACAAATAAATCTTCTGTGGGGTACCTTATTGTATGAACGTTCTGTTGTGGAGTATAAGCTAAACCTAGCAACGTGGGAGGAATGCTTGGAGGTGTCAGTTGAGAAGTTTGAACTGGCTGGAGCTTCTCAAACGGATATAGCTGTCATGATCAAAAATCATTGTTCCAACGTAACAGCACTAGAAGGTTGGGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTACGATGCACAGAGATGGCAATTTGGAGTTCCATCGTTTCGACTTGAGCCTTTGTTTCGTCGTCGCGCTCCAAAACTTCACTACATGTTGGAGCAATTCtaa 1803 0.4432 MGKPSGKKRDHVAEHKANANGKSVKPPERTSKAFDEDTAMFINMSHDLKEEGNRLFQKKDYEGAVLKFEKALKLLPRNHIDVALLHTHMASCHMQMGLGEYPQAINQCNLALQVSPRYSKALIKRAKCYEELNRLDLALRDVGNVEEKPVTRTAKLVYGEDIRWAQLPVNCSLRLVRDVIRDRFPGLKGVLVKYKDQDGDLVTLTTTEELRLAESSSHVVDPEQEPCYEEMSNENDLARVDDGGKEKNEGAKEEAKEDEAKRMTTVEDWLIQFARLFKNHVGFDSDSYLDLHELGMTLYSEAMEDTVTSDEAQELFEIAADKFQEMSALAMFNWGNVHMSKARKRASISEEASNSFENMKAAYEWAQKEYMRAEMKYEESLKIKPDFYEGYLALGHQQFEQAKLCWYYLNACKKDDVEGSTSGEVLQLYNKAEDSMEKGMLMWEEVEEQRLNGLSKAEKYKAQLQKVGLDGVFKDVSFEEATEQAENMRSQINLLWGTLLYERSVVEYKLNLATWEECLEVSVEKFELAGASQTDIAVMIKNHCSNVTALEGWGFKIDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRAPKLHYMLEQF 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3328 600 MobiDBLite consensus disorder prediction 1 30 - -
Sto9g3328 600 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Sto9g3328 600 PANTHER PROTEIN PHOX4 1 145 - -
Sto9g3328 600 PANTHER PROTEIN PHOX4 146 599 - -
Sto9g3328 600 PANTHER PROTEIN CLMP1 146 599 IPR044517 -
Sto9g3328 600 PANTHER PROTEIN CLMP1 1 145 IPR044517 -
Sto9g3328 600 Gene3D - 156 223 - -
Sto9g3328 600 MobiDBLite consensus disorder prediction 232 259 - -
Sto9g3328 600 SMART PB1_new 151 223 IPR000270 GO:0005515
Sto9g3328 600 SUPERFAMILY TPR-like 37 142 IPR011990 GO:0005515
Sto9g3328 600 Pfam PB1 domain 152 216 IPR000270 GO:0005515
Sto9g3328 600 Gene3D Tetratricopeptide repeat domain 43 155 IPR011990 GO:0005515
Sto9g3328 600 SUPERFAMILY CAD & PB1 domains 149 216 - -
Sto9g3328 600 SMART tpr_5 119 152 IPR019734 GO:0005515
Sto9g3328 600 SMART tpr_5 83 118 IPR019734 GO:0005515
Sto9g3328 600 SMART tpr_5 45 78 IPR019734 GO:0005515
Sto9g3328 600 SMART tpr_5 354 387 IPR019734 GO:0005515
Sto9g3328 600 MobiDBLite consensus disorder prediction 213 259 - -
Sto9g3328 600 CDD PB1 155 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3328 Sto-Chr9 33223101 33225378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3328 28 156 Calmodulin-binding Proteins AT3G25230 28.777 1.73e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3328 - - cam:101499892 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0885 5 5916991 5919212 Sto9g3328 9 33223101 33225378 CCT