Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3305 ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAGCGTCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTTTGCTTAAAAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAAGCAGCAGCTAGAGCCTATGATCAAGCAGCTATTTTGATGAATGGAAGAAATGCAAAGACCAATTTCCCTCGTGAAGATAATAAGgataatgagaatgagaatgagaatgagaaggaTGCTTCTTCTGCCTCTTTCTTGTCTCCCAAGGCTCTCTCTGAGTTATTAACCACTAAGCTCAAGAAATGCTGTAAGGACCCTTCTCCTTCCCTCACATGTCTGAGGCTTGATTCTGATAATTCCCACATTGGAGTGTGGCAGAAGACACCTGGTCCTCGCTCTCACTCCAATTGGGTCTTAAGGGTTCAGCTTGGAAACAACAAGCATAATCTCAATCCAAGTAACACCACCATAGCACCAGAAAAAGACATTattgctgatgatgatgatgcttcTGCAAGTGGTGGTGTGCAAGAGGAAGAAGACAAAGAGGCAATGCAGATGATTGAAGAGCTTCTTAATTGGAATTGCCCTTTTGGTTCTTCAAGTAATCCTCAGCTGGAGAATCAAAGAGAACCTTCCATGTCAGAGTTGTtgaattag 660 0.4061 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPREDNKDNENENENEKDASSASFLSPKALSELLTTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKTPGPRSHSNWVLRVQLGNNKHNLNPSNTTIAPEKDIIADDDDASASGGVQEEEDKEAMQMIEELLNWNCPFGSSSNPQLENQREPSMSELLN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3305 219 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Sto9g3305 219 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Sto9g3305 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 201 - -
Sto9g3305 219 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Sto9g3305 219 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Sto9g3305 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
Sto9g3305 219 MobiDBLite consensus disorder prediction 198 219 - -
Sto9g3305 219 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Sto9g3305 219 MobiDBLite consensus disorder prediction 61 78 - -
Sto9g3305 219 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Sto9g3305 219 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Sto9g3305 219 MobiDBLite consensus disorder prediction 57 84 - -
Sto9g3305 219 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3305 Sto-Chr9 33084089 33084890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3305 1 206 AP2-EREBP Transcription Factor Family AT5G25390 58.937 2.88e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g3305 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3305 - - lang:109326202 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3305 9 33084089 33084890 Sto9g3305 9 33084089 33084890 ECH