LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g3302	ATGGGAGAAACGAAGGACGAAGGATACGAGGAAGAGCTTCTTGACtacgaagaggaagaagaaaaagcccCTGATTCCGTTGGAACCAAAGTCAATGGTGAAACTGCTAAGAAGGGCTATGTCGGGATCCACAGTTCCGGATTCAGAGACTTCTTACTGAAGCCAGAGCTTCTTCGTGCTATTGTGGACTCTGGATTTGAGCATCCTTCTGAAGGCAAACTATCCAATTACCCATACAATTACCTACATTCCATCGACACTGTTTTCTTTGGTTCATCATCAGTACAACATGAGTGCATACCTCAAgcaatcctcggaatggatgtGATTTGTCAAGCTAAATCAGGAATGGGGAAAACAGCTGTATTCGTTCTCTCAACTTTGCAGCAAATCGATCCCGTTGCAGGCCAAGTAGCTGCACTTGTTCTGTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAATTTGAGAGGTTTAGTACCTACTTGCCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTATTGAAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGAATTCTAGCATTGGCTCGTGATAAGGACCTGTCACTGAAGAATGTCAGACATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCATTGGACATGAGGCGAGACGTTCAAGAGATTTTCAAGATGACTCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAGAAATTCATGCAAGATAGAGGGATGTGGTGTGAGTGGTACTCTGGGGTTGCTGTTGCCAGTATTCTTAGTGTGTCAGGAGTTGGTGGTGCTTGCCTTGGCCCAATGGAAATTTATGTCGATGACGAGGCCAAGTTGACCCTTCATGGGCTTGTGCAGCACTACATCAAGTTgaaagaggaggagaagaacaGGAAATTGAATGATCTTCTTGATGCACTAGACTTCAATCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATCCACTCTGGCATGTCACAGGAGGAAAGGTTAAAGCGCTATAAAGGTTTTAAGGAGGGGCATACGCGGATTCTTGTAGCAACAGATTTGGTTGGCAGGGGAATTGACATTGAACGTGTTAATATTGTAATAAACTATGATATGCCTGATTCTGCAGACACATACCTGCACAGGGTTGGCAGAGCTGGAAGATTTGGCACCAAAGGCCTTGCCATTACATTTGTTTCTTGTGCTTCTGATGTTGATGTTCTCAATAATGTTCAATCAAGGTTTGAAGTTGATATAAAGCAACTACCCGAGCAGATTGATACCTCAACCTACAGTATGTTCATTCTCATAAATGGCGCTCATTTGAGACTGTCCAGTGTCATGTTCTTATCACATTTTGTTCAATTATGTTTCACTTGCTTTCTCCTTGAACTGGATCATGGAATGCCttcataa	1548	0.4057	MGETKDEGYEEELLDYEEEEEKAPDSVGTKVNGETAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLSNYPYNYLHSIDTVFFGSSSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDRGMWCEWYSGVAVASILSVSGVGGACLGPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCASDVDVLNNVQSRFEVDIKQLPEQIDTSTYSMFILINGAHLRLSSVMFLSHFVQLCFTCFLLELDHGMPS	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g3302	515	SMART	helicmild6	353	434	IPR001650	-
	Sto9g3302	515	Gene3D	-	34	272	IPR027417	-
	Sto9g3302	515	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	313	474	IPR001650	-
	Sto9g3302	515	CDD	SF2_C_DEAD	314	443	-	-
	Sto9g3302	515	Pfam	Helicase conserved C-terminal domain	327	434	IPR001650	-
	Sto9g3302	515	Gene3D	-	310	478	IPR027417	-
	Sto9g3302	515	Pfam	DEAD/DEAH box helicase	94	259	IPR011545	GO:0003676\|GO:0005524
	Sto9g3302	515	SMART	ultradead3	88	288	IPR014001	-
	Sto9g3302	515	MobiDBLite	consensus disorder prediction	1	31	-	-
	Sto9g3302	515	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1	298	473	-	-
	Sto9g3302	515	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1	27	272	-	-
	Sto9g3302	515	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	100	273	IPR014001	-
	Sto9g3302	515	CDD	DEADc_DDX39	45	269	-	-
	Sto9g3302	515	MobiDBLite	consensus disorder prediction	1	22	-	-
	Sto9g3302	515	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	138	446	IPR027417	-
	Sto9g3302	515	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	27	272	-	-
	Sto9g3302	515	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	298	473	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g3302	Sto-Chr9	33065056	33069091	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g3302	1	475	Eukaryotic Initiation Factors Gene Family	AT5G11200	80.982	0.0	749

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0851	5	5699565	5704651	Sto9g3302	9	33065056	33069091	CCT
	Sto9g3302	9	33065056	33069091	Sto9g3302	9	33065056	33069091	ECH
	Sto5g0851	5	5699565	5704651	Sto9g3302	9	33065056	33069091	ECH