Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3273 ATGTCTCAGACTAACTGGGAAGCTGATAAGAtGTTAGATGTTTATATCCATGATTATCTTGTAAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTTTCCTCGGATCCAGTTGCCATTGATGCTCCGGGAGGTTTTCTGTTCGAGTGGTGGTCAGTTTTCTGGGATATATTTATTGCCAGGACTAATGAGAAGCACTCAGAAGTTGCTGCATCTTACATTGAGCAAAGATTTGGTGAAAATATGGGCCAACTTTTGGACCCAAATCATGCCTCGATATTGAAGTCAGCTGCAGCTTCTGGCCAGCCCTCAGGACAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACTCCAGATATAAAGACTGAGATTAATCCTGTTTTAAATCCAAGAGCTGCAGGTCCTGAAGGATCATTAATAGGAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCACTAACAGACTTGGAACAACTGCGCTCTGGTATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAGCCCTTTCACCAACTTCAAATGTTGTCACCACAGCATCAGCAACAGCTTATGCTTGCACAAAATTTAGCATCACCATCTGCCAGCAGTGATGAGAGAAGACTCAGAATGTTACTGAATCCTAATAATAGGAGTATGAACCTGAGCAAGGACGGTCTTTCAAATCCTGTTGGTGACGTGGTATCAAATGTGGGATCACCTCTTCAAGCTGGTGGTCCTCTTTTGCCTCGCACGGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGATACAGCAGCAACATCAACAACAGCAGAGCACCAATCCTCAGCAGCAGCAAATTCAACAGCACGTTCTTTCAAATCAGCAACCTCAGACTTCAAACCATAACATGCATCAGCTAGATAAAGTGGGGGGTGGTGGCAGTGTTGCTGTGGATGGTAGTATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTTCTGGAACAGCGAATACAGCAGGTCCATCGCCAAGTTCAGCACCCTCTACTCCTTCAACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTACCTCCTAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTTGGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGATTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGCATGGATGTAAGCAAAGGCTTCACGTTTTCTGAAGTAAATTCTGTACGAGCAAGCACAAGCAAAGTTGTCTGCTGCCACTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGATAAAAAGGCTGTTTTATGGTACACAGATTCTTTAAAGCAAAAAACCACTCTTGAGGAACATTCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGACAAAACTGTCCGGGTTTGGGATGTTGAAAATCCTGGGTATTCACTTCGCACCTTTACAGGACATTCTGCTTCTGTTATGTCATTAGATTTTCACCCAAATAAAGATGATCTCATCTGCTCTTGTGATGGTGATGGTGAGATACGATATTGGAGTATAACCAACGGAAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGTATGGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAAACACAGGCATGCCGATATTCATTACAGGGACATACAAAGCCCATACATTCAGTGTGCTGGGATCCTACAGGGGAATTACTGGCATCTGTCAGTGAGGACTCAGTCAGGGTTTGGACTCTAGGATCAGGGAGTGAAGGAGAATGCGTTCATGAGCTAAGCTGCATGTCAACAGTAACCGGTTTGGTCGCTTCTGCTAGTCATGACAAGTTTGTCAAGCTCTGGAAATAA 2175 0.44 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEQRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGAAGGMSQQVQARSQQLPGSTPDIKTEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTDLEQLRSGILHQQKPFIQAPQPFHQLQMLSPQHQQQLMLAQNLASPSASSDERRLRMLLNPNNRSMNLSKDGLSNPVGDVVSNVGSPLQAGGPLLPRTDTDMLMKLKLAQIQQQHQQQQSTNPQQQQIQQHVLSNQQPQTSNHNMHQLDKVGGGGSVAVDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPPSGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVENPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSITNGSCARVSKGGTAQMRFQPRMGRYLAAAAENVVSILDVETQACRYSLQGHTKPIHSVCWDPTGELLASVSEDSVRVWTLGSGSEGECVHELSCMSTVTGLVASASHDKFVKLWK 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3273 724 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 85 703 IPR044716 GO:0003714
Sto9g3273 724 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 82 IPR044716 GO:0003714
Sto9g3273 724 SUPERFAMILY WD40 repeat-like 484 723 IPR036322 GO:0005515
Sto9g3273 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 567 IPR001680 GO:0005515
Sto9g3273 724 SMART Lish 8 40 IPR006594 GO:0005515
Sto9g3273 724 ProSitePatterns Trp-Asp (WD) repeats signature. 551 565 IPR019775 -
Sto9g3273 724 Gene3D - 467 622 IPR015943 GO:0005515
Sto9g3273 724 SMART WD40_4 694 724 IPR001680 GO:0005515
Sto9g3273 724 SMART WD40_4 483 522 IPR001680 GO:0005515
Sto9g3273 724 SMART WD40_4 568 608 IPR001680 GO:0005515
Sto9g3273 724 SMART WD40_4 525 564 IPR001680 GO:0005515
Sto9g3273 724 SMART WD40_4 650 688 IPR001680 GO:0005515
Sto9g3273 724 MobiDBLite consensus disorder prediction 292 432 - -
Sto9g3273 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 613 - -
Sto9g3273 724 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 82 - -
Sto9g3273 724 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 85 703 - -
Sto9g3273 724 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Sto9g3273 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 531 IPR001680 GO:0005515
Sto9g3273 724 MobiDBLite consensus disorder prediction 337 396 - -
Sto9g3273 724 MobiDBLite consensus disorder prediction 404 432 - -
Sto9g3273 724 CDD WD40 494 724 - -
Sto9g3273 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 697 IPR001680 GO:0005515
Sto9g3273 724 Gene3D - 623 724 IPR015943 GO:0005515
Sto9g3273 724 MobiDBLite consensus disorder prediction 292 325 - -
Sto9g3273 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 532 567 - -
Sto9g3273 724 Pfam WD domain, G-beta repeat 529 564 IPR001680 GO:0005515
Sto9g3273 724 Pfam WD domain, G-beta repeat 653 687 IPR001680 GO:0005515
Sto9g3273 724 Pfam WD domain, G-beta repeat 490 521 IPR001680 GO:0005515
Sto9g3273 724 Pfam WD domain, G-beta repeat 695 724 IPR001680 GO:0005515
Sto9g3273 724 Pfam WD domain, G-beta repeat 571 608 IPR001680 GO:0005515
Sto9g3273 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 617 IPR001680 GO:0005515
Sto9g3273 724 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3273 Sto-Chr9 32895263 32904472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3273 508 689 U-box Gene Family AT2G33340 33.508 9.05e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Sto9g3273 WD40 3.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3273 - - gmx:100816263 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0805 5 5463948 5473517 Sto9g3273 9 32895263 32904472 CCT