Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3266 ATGGAGCAGCCAGGGCCCTTGAACAACAATCAGCACATTATTGACATAGCTGGGAGTAGTGAAGCTTCCACATCTTCCTCTTCTCATGATAGACATTTTAATGGCATAGGTACATCACAACACGAAGACAGACCTAGTAGTGCAAGATTACCTGCTTCTTTGCCTTCAGTTTCTGTAGTGTCTAATGGTACAAATTCTAGGAATTCTTTAGTAAGACGTGCGGATACTCGTCGACAGAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTTCTCACAGTAAGCCAGATTATTGCATCTATTGTTGTTCTGTCTTTGTCAAGGCAGGAGAATCCACGTACTCCATTGTTTGCATGGATTGTCGGTTATGCATTGGGATGCTTTGCTACTCTCCCTCTGCTTTATTGGAGGTATTATCAACATAACCAGATTCGGGAGCAAAATTCATCTCAACCACGTCAAGCCTCTCCTCGAGTTAATGTTTCTTCAGGGACACTTCTTTCTGTTTCCAGAACCAATGGAAGAGAAGATGATCAGGCTGCTGGTCCATCCTCCAGAAGTAGTCAGGTTTCAGGATTGATGAATACAAGCAGATTGAAGGCGCTAGTTGATTACTTCAAGATGGCCTTAGATTGTTTTTTTGCTATATGGTTTGTTGTTGGCAATGTATGGATCTTTGGGGGACACTCTTCTGCCAATGAAGCTCCTAACTTGTACAGGTTATGTATTGTGTTTCTTACCTTCAGCTGTATTGGGTATGCTATGCCTTTCATTTTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTTGGGGTGAGAGAGGACCTGACACAAACAAGAGGGGCAACCTCTGAATCCATTAATTCCTTGCCAACTTACAAGTTCAAGATGAAAAGACATAGAAACAGTGATGAAAGAAACTCAAATGTTTGTGAAGGTGGAGTTGTAGCTGCAGGAACTGAGCAAGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGTTGCATCTGCTTGGCAAAGTATGAAAATAATGATGAGCTGAGAGAGTTGCCTTGTTCCCATCTTTTTCACAAGGAATGTGTTGACAAGTGGTTGAAGATAAATGCTGTATGCCCTCTTTGTAAAAGTGAGGTTGGTGGGAACTTAACAGGATCAGTCTCCGGTGAAGGTGCTGGCCAACATAGGGGTGAGAGCAGAACTGGAAATAGCCCAGTCAATAGCTTAGTATAA 1248 0.4247 MEQPGPLNNNQHIIDIAGSSEASTSSSSHDRHFNGIGTSQHEDRPSSARLPASLPSVSVVSNGTNSRNSLVRRADTRRQRSPLNSGLWISIELVLTVSQIIASIVVLSLSRQENPRTPLFAWIVGYALGCFATLPLLYWRYYQHNQIREQNSSQPRQASPRVNVSSGTLLSVSRTNGREDDQAAGPSSRSSQVSGLMNTSRLKALVDYFKMALDCFFAIWFVVGNVWIFGGHSSANEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINSLPTYKFKMKRHRNSDERNSNVCEGGVVAAGTEQERVISGEDAVCCICLAKYENNDELRELPCSHLFHKECVDKWLKINAVCPLCKSEVGGNLTGSVSGEGAGQHRGESRTGNSPVNSLV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3266 415 MobiDBLite consensus disorder prediction 391 415 - -
Sto9g3266 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 407 - -
Sto9g3266 415 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Sto9g3266 415 SMART ring_2 340 380 IPR001841 -
Sto9g3266 415 MobiDBLite consensus disorder prediction 20 74 - -
Sto9g3266 415 SUPERFAMILY RING/U-box 331 384 - -
Sto9g3266 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 392 IPR013083 -
Sto9g3266 415 CDD RING-H2_RNF111_like 339 381 - -
Sto9g3266 415 Pfam Ring finger domain 340 381 IPR001841 -
Sto9g3266 415 MobiDBLite consensus disorder prediction 20 70 - -
Sto9g3266 415 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3266 Sto-Chr9 32850689 32853927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3266 37 385 C3H Transcription Factor Family AT1G80400 56.780 6.12e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3266 - - gmx:100778728 608.216