Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3258 ATGGGAGAGGTGGAAGTAATGCACTCTGAGATTCTACAGTTCGAGTGCAAAGACATGAAGTATATGGCTGAGAAAGATGTGTACACTTCACAATCATATGCAGAGCACATGCCTGGAGAAGAATCAAGTCAATCAACTGATCACAAAAAGATCAATGACTTGCGAGAGAAAGGATATATGCAATATGGTTGTGAACATTACAGGAGGAGATGCCGTATTCGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCACCATTGTCACAATGAGGCAAAAAATGATATGAACATTGATCAGAAGCATAGACATGACATTCCCCGCCATCAAGTCAAAGAGGTGATATGTTCGCTTTGTGGGACTGAACAGGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGCGAGACATGCAAACTCTTTGATGATAATCAGATATCTAAGCAACAGTACCATTGCAATGGTTGCGGGATTTGCAGAATTGGAGGGCGTGAGAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCGACTCTTCTGAAAAACAGTCACTCTTGTGTGGAAGGAGCAATGCACCACGATTGCCCTGTCTGTTTTGAGTATTTATTCGAATCCAGAAACGACATTACCGTAATGCCGTGCGGGCATACAATCCATAAGAGCTGCCTGAAAGAAATGAGAGAACATTTCCAGTATGCATGCCCTCTCTGCTCCAAGTCAGTTTGTGACATGTCAAAGGTTTGGGAGAAATTCGACATGGAGATTGCTGCCACACCAATGCCAGAactatatcaaaataaaatgGTTTGGATCCTTTGCAATGATTGTGGTAAGAGCTGTCGAGTTCAGTACCATGTTGTAGCACAAAAATGTCTGAACTGCAAATCCTACAACACACGACAAACAAGAGGAGGGTGA 936 0.4241 MGEVEVMHSEILQFECKDMKYMAEKDVYTSQSYAEHMPGEESSQSTDHKKINDLREKGYMQYGCEHYRRRCRIRAPCCNEIFDCHHCHNEAKNDMNIDQKHRHDIPRHQVKEVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLFDDNQISKQQYHCNGCGICRIGGRENFFHCYKCGCCYSTLLKNSHSCVEGAMHHDCPVCFEYLFESRNDITVMPCGHTIHKSCLKEMREHFQYACPLCSKSVCDMSKVWEKFDMEIAATPMPELYQNKMVWILCNDCGKSCRVQYHVVAQKCLNCKSYNTRQTRGG 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3258 311 ProSiteProfiles Zinc finger CTCHY-type profile. 135 200 IPR017921 -
Sto9g3258 311 Pfam Ring finger domain 200 243 IPR001841 -
Sto9g3258 311 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 18 310 - -
Sto9g3258 311 SUPERFAMILY RING/U-box 200 249 - -
Sto9g3258 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 246 IPR013083 -
Sto9g3258 311 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 18 310 - -
Sto9g3258 311 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Sto9g3258 311 SUPERFAMILY Zinc hairpin stack 136 194 IPR037275 -
Sto9g3258 311 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Sto9g3258 311 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Sto9g3258 311 ProSiteProfiles Zinc finger RING-type profile. 201 244 IPR001841 -
Sto9g3258 311 SMART ring_2 201 243 IPR001841 -
Sto9g3258 311 Pfam Zinc-ribbon 248 306 IPR039512 -
Sto9g3258 311 Gene3D - 272 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3258 Sto-Chr9 32791642 32794068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3258 54 310 C2H2 Transcription Factor Family AT3G18290 37.643 6.78e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3258 K10144 - gmx:100803569 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0780 5 5320540 5323473 Sto9g3258 9 32791642 32794068 CCT
Sto9g3258 9 32791642 32794068 Sto5g0684 5 4632527 4634562 CCT