Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3234 ATGTCTCGTGTTTATGTTGGTAATTTGGATTCTAGAGTTACTGAGAGAGATCTTGAAGATGAATTCCGTGTATTCGGAGTCATACGGAGTGTGTGGGTTGCGCGGAGGCCACCTGGTTATGCTTTTATTGACTTCGATGACCGCAGAGATGCACAGGATGCTATACGTGAAATAGATGGTAAGAATGGTTGGAGGGTAGAACTTTCACACAACTCTAGAGGTGGAGGTGGAGGTGGCGGACGTGGAGGTGGAGGTGGTCGTGGTCGTTCTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGAGAGCCTGGTCATTTTGCACGTGAATGTCGAACTCGTGGTGGTTCAGGAAGACGTCGTAGTCGCAGTCCTCCACGATTTCGCAGAAGCCCAAGTTATGGGAGAAGGAGTTATAGTCCTCGTGGGCGGTCTCCTAGGCGCCGTAGTTTGTCACCACGTGGACGCAGCTATAGTAAGTCGCCTCCTTACCGTGGGCGTGAGGAGCTACCATATGCTAATGGAAATGGCATAAGGGATCGGCGACGTAGCAGAAGTTGA 558 0.5018 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIREIDGKNGWRVELSHNSRGGGGGGGRGGGGGRGRSGGSDLKCYECGEPGHFARECRTRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSKSPPYRGREELPYANGNGIRDRRRSRS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3234 185 Gene3D - 1 95 IPR012677 -
Sto9g3234 185 MobiDBLite consensus disorder prediction 66 185 - -
Sto9g3234 185 MobiDBLite consensus disorder prediction 101 116 - -
Sto9g3234 185 ProSiteProfiles Zinc finger CCHC-type profile. 96 111 IPR001878 GO:0003676|GO:0008270
Sto9g3234 185 SUPERFAMILY Retrovirus zinc finger-like domains 79 116 IPR036875 GO:0003676|GO:0008270
Sto9g3234 185 Gene3D - 96 149 - -
Sto9g3234 185 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Sto9g3234 185 Pfam Zinc knuckle 96 111 IPR001878 GO:0003676|GO:0008270
Sto9g3234 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Sto9g3234 185 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 177 - -
Sto9g3234 185 CDD RRM_SRSF3_like 3 71 - -
Sto9g3234 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Sto9g3234 185 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 177 - -
Sto9g3234 185 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Sto9g3234 185 SMART rrm1_1 3 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3234 Sto-Chr9 32600346 32602616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3234 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 7.69e-06 43.5