Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3213 ATGGGTGTTGCTTCTGGAGGAGGAAATAAAGAGGAAAGGCAAAAGCAACAAAGTCTACCTCCAGGGTTTCGATTCCATCCTTCAGACGAAGAACTCATCACGTACTATCTGATGAACAAGATCTCGGATTCTAGTTTTACAGGAAGAGCGATTGGCGATGTTGATCTGAACAAGTGCGAGCCATGGGAGCTTCCAGGGAAGGCGAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCTTGAGAGATCGGAAATACCCCACCGGAGTGAGGACCAACAGAGCAACCAACACCGGCTACTGGAAAACCACCGGCAAAGACAAGGAAATAATAATCAACACCACCACATCCTCGTCTTCGTCGACTTCAGTGGTTGGGATGAAGAAGACTCTGGTGTTCTACAAAGGAAGAGCGCCGAGGGGTGAGAAAACAAACTGGGTGATGCATGAATACCGCATCCACTCTAAATCCTCCTTCTTCAGTAGCAACACCAATAAGCAATTAGATGAATGGGTGGTGTGCCGTGTGTTCCAGAAGAGTGGGGGTCCCAAAAAGTACCCTCCTCCTCCATcaagatcatcatcatcagcttCAGCATTACTACTCAATAATATTATCCATCCTTATAATACCCTCCACCTCCACAATATTAATATGCCACACCCACCAGTACCGCCATTCAATTTCAATATGAATATGATGCAGCAGCTTGGAGTAGGagacatgaataataataatattggagCGGTACCACCTCATTTTGTTTATGGAATGATGAGTAGTAGTGGTGGATCAACTCCTACTCTCAACCTTAATCCATTAATGCAATCGTCTCACTTCAATTTTCCGGTAAGCACAGAAGGCGCCTTCACTATTTCAGGTCTCAATTTGAATCTAGGAGGAGCCAGGGCGCCCATTACTCATCAAAACGATGTCGTCGTCACTTCCAACATGGGGGACTATAATGCATCGGAAATAAGCCACCTCAACCTCATTCCTCAACACACCAATACCAACATCGATCACTGTGTCGATCTCGATACTTACTGGCCTTCCTACTAA 1059 0.44 MGVASGGGNKEERQKQQSLPPGFRFHPSDEELITYYLMNKISDSSFTGRAIGDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIIINTTTSSSSSTSVVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSFFSSNTNKQLDEWVVCRVFQKSGGPKKYPPPPSRSSSSASALLLNNIIHPYNTLHLHNINMPHPPVPPFNFNMNMMQQLGVGDMNNNNIGAVPPHFVYGMMSSSGGSTPTLNLNPLMQSSHFNFPVSTEGAFTISGLNLNLGGARAPITHQNDVVVTSNMGDYNASEISHLNLIPQHTNTNIDHCVDLDTYWPSY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3213 352 Pfam No apical meristem (NAM) protein 20 152 IPR003441 GO:0003677|GO:0006355
Sto9g3213 352 ProSiteProfiles NAC domain profile. 19 178 IPR003441 GO:0003677|GO:0006355
Sto9g3213 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 317 - -
Sto9g3213 352 MobiDBLite consensus disorder prediction 1 25 - -
Sto9g3213 352 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 9 317 - -
Sto9g3213 352 SUPERFAMILY NAC domain 15 178 IPR036093 GO:0003677|GO:0006355
Sto9g3213 352 Gene3D NAC domain 28 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3213 Sto-Chr9 32483899 32485398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3213 7 352 NAC Transcription Factor Family AT2G24430 49.014 9.11e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto9g3213 NAM 3.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3213 - - jre:109019173 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3213 9 32483899 32485398 Sto9g3213 9 32483899 32485398 ECH