Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3185 ATGTGGAAGCCTTTTCTGGGGTTCATtatgcttctttctttcttcttcatcaatgTTCAACCCCAAGAAACATCAGAGAACTTGCCAGAAATGCCTCAAACTCTGCATCCTAGTAAAGGGATTGTAATAGCAGTCCTAACCATTATGTTTgccatttcatttttcttacttGCCTATGTCAAGTTCTGTAGAACCAGCCCTTTCAGCCTTAATAGGCTTCTCAACCGCGATGTAAACTTTCAGGGACTAACTCAAAGAGCCTCTACTACATATTCAGGCATAGACAAACAAGTGATCGAAGCACTCCCCTTTTTCAAGTTCTCTTCACTCAAGGGATCAAAACAAGGCCTAGAATGTTGTGTTTGCCTGTCCAAGTTCGAGGACACCGAGGTTCTTAGGTTGCTTCCCAAGTGCAAGCATGGTTTCCACATGAATTGCATCGACAAGTGGCTTGAGACTCACTCCACTTGCCCTCTATGCAGATACAGGGTTGATCCTGCAGATATCAAGGCCTTCACTTGCTCAATCAGCTCCAGATTCCTCCAAGTCCCTTCAAACTTAACACAAGACCCAACTCTTGAAATCTTTGTGCAGAGGGAGGAATCTCGTGGGGAAGAAGGGTCGTCCAAATTCAGCAGCTTTTGGAATATTGGGGAAAGGTGGAAACTTGTGCACTCCCAGCAGAGAGTGAATCACAAAATAGTGATATCTGATACTGTTGCGACTAGGAGCAGGTGGAGTGATCTTAATTCCTCGGACTTACTATCCTTAAACTGCGAGATGCTGAATGATGTGTCGGGAAGGAGAGTGTGTGGTTCGAAGGAGGAAGAGAATTGGTTAAGGTCCATGTCTGAGATTGCGAATGTTGCGAGGTTTGAAGAAAAGAGAATGAAGGAATTGGGGGTTTCAACTTCAAGTGGGTATAATGGGAAGGAAGAGAGGTTGAGGAAGATGTGGCTGGCAATCGTGGAGAGAACAGTGAAGTGGTTTGCAGGAGGAGACAGAAGCTTGAGAGAGATGGAACACAAACTTTTGACAGTGTAA 1044 0.431 MWKPFLGFIMLLSFFFINVQPQETSENLPEMPQTLHPSKGIVIAVLTIMFAISFFLLAYVKFCRTSPFSLNRLLNRDVNFQGLTQRASTTYSGIDKQVIEALPFFKFSSLKGSKQGLECCVCLSKFEDTEVLRLLPKCKHGFHMNCIDKWLETHSTCPLCRYRVDPADIKAFTCSISSRFLQVPSNLTQDPTLEIFVQREESRGEEGSSKFSSFWNIGERWKLVHSQQRVNHKIVISDTVATRSRWSDLNSSDLLSLNCEMLNDVSGRRVCGSKEEENWLRSMSEIANVARFEEKRMKELGVSTSSGYNGKEERLRKMWLAIVERTVKWFAGGDRSLREMEHKLLTV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3185 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 169 IPR013083 -
Sto9g3185 347 PANTHER RING-H2 FINGER PROTEIN ATL4J 280 342 - -
Sto9g3185 347 PANTHER RING-H2 FINGER PROTEIN ATL4J 12 274 - -
Sto9g3185 347 CDD RING-H2_PA-TM-RING 118 161 - -
Sto9g3185 347 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Sto9g3185 347 Pfam Ring finger domain 118 161 IPR001841 -
Sto9g3185 347 SUPERFAMILY RING/U-box 98 166 - -
Sto9g3185 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 274 - -
Sto9g3185 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 280 342 - -
Sto9g3185 347 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3185 Sto-Chr9 32285784 32286920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3185 27 336 C3H Transcription Factor Family AT2G20030 40.616 1.06e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3185 K10664 - gmx:100803881 327.791