Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3169 ATGGAAGGACACCAGTATTTGCAGAACACTACTTCTGACCCCTTCATCGTCGAAGACCTCCTCGACTTCCCCAACGACGACGCTACCTTCGATGACTCCATTCCCGCCAACTCTCTCTCCACCGAATCTTCCTCTCACACCGGCAACGCCCTTGATACCTCCATTTCCTCTGCCTCATGCGACCCCATTTTCCTCCCCGACCGCAATTTCTCTACTGATCTCTGCGTTCCCTACGATGAAATGGCGGAGCTGGAATGGCTTTCGAATGTGGTGGAGGAATCGTTCTCCAACGAGGACTTGCAGAAGCTGGAGCTGATATCAGGTATGAAAGCGCGAAACAACATGGAATTAGCCTCACACCATCATAATCATGAATTCCAGGCAGAAACCAACCGAAACCTGAACAatatcaacaacaacaataataacagCCCCATATTCAATTCCGAAGTCTCCGTTCCCGCCAAGGCTCGAAGCAAGCGTTCACGTGGCTCTCCCTGCAATTGGACTTCTCgccttctcctcctctctccatctccatctcccTCCCCAACCTCTTCTTCCTCCGACCCCATCCTTCCCCCTCCTAATAAGAAACCCGCCAAGTCCGGCCCCCGCAGGAAGGACTCCTCCGCCTGCGCTAACGCCGGCGAGGGGCGCAAGTGCCTCCATTGCGCCACCGATAAGACGCCGCAATGGCGGACGGGGCCCATGGGCCCCAAAACGCTATGCAATGCGTGCGGAGTGAGGTACAAGTCGGGGCGGTTGGTACCCGAGTACCGACCCGCAGCGAGCCCGACTTTCGTGCTGACGAAGCATTCGAATTCGCACCGGAAGGTGATGGAGCTCCGACGCCAGAAGGAGATGATGAGTCAGCAGCAGCAATTCGTGCAACATCCAAACACCATGTTCGGCGCCGGGGACGAGTATTTGATCCACCAGCACGTGGGCCCCGACTTCAGGCACCTGTTTTAG 975 0.5303 MEGHQYLQNTTSDPFIVEDLLDFPNDDATFDDSIPANSLSTESSSHTGNALDTSISSASCDPIFLPDRNFSTDLCVPYDEMAELEWLSNVVEESFSNEDLQKLELISGMKARNNMELASHHHNHEFQAETNRNLNNINNNNNNSPIFNSEVSVPAKARSKRSRGSPCNWTSRLLLLSPSPSPSPTSSSSDPILPPPNKKPAKSGPRRKDSSACANAGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMSQQQQFVQHPNTMFGAGDEYLIHQHVGPDFRHLF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3169 324 MobiDBLite consensus disorder prediction 163 183 - -
Sto9g3169 324 MobiDBLite consensus disorder prediction 153 214 - -
Sto9g3169 324 CDD ZnF_GATA 221 268 IPR000679 GO:0006355|GO:0043565
Sto9g3169 324 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Sto9g3169 324 PANTHER GATA TRANSCRIPTION FACTOR 10 323 - -
Sto9g3169 324 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Sto9g3169 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 280 - -
Sto9g3169 324 SMART GATA_3 216 266 IPR000679 GO:0006355|GO:0043565
Sto9g3169 324 ProSiteProfiles GATA-type zinc finger domain profile. 216 252 IPR000679 GO:0006355|GO:0043565
Sto9g3169 324 PANTHER GATA TRANSCRIPTION FACTOR 10 323 - -
Sto9g3169 324 MobiDBLite consensus disorder prediction 184 200 - -
Sto9g3169 324 Gene3D - 217 298 IPR013088 GO:0006355|GO:0008270
Sto9g3169 324 PIRSF Txn_fac_GATA_plant 1 306 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3169 Sto-Chr9 32196825 32197919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3169 2 324 C2C2-Gata Transcription Factor Family AT5G25830 51.275 1.37e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto9g3169 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3169 - - gmx:100784144 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3169 9 32196825 32197919 Sto9g3169 9 32196825 32197919 ECH