Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3129 ATGTTTCCGCCGCCACTAGTAGAGGAGAAGGAAAAGGAAGGTGAAGGTGAAAGCAATGTGAGCTTATTGTGTTCCTCAACAATCACCATGGAATTGGAAATGGAAAGTGTGTGCCTCAAAAACTACATAGGAATGGGATTGTCCGATTCTTCTTCAGTTGATAGCTCACTACTATCATCCTTCTCGGACGAGAGGAAGAAGAGTAAGCTGAATCTGAAAGCCACAGAGTTAAGGCTTGGGCTTCCAGGATCTTCATCTCCTGAAAGACAAGACCACTcagatcatcatcatcttttcttAACAAGTTCAACAACACAGTTTGATGAGAAACCTCTGTTTCCTCTGTGTCCCTCGAAGAATCCTATTTTGGGCAACAAAAGAGGGTTCTCAGATGCCATGACTGGCTTCTCCGAGGGGAAATTCCTAGTAAATTCGGAGGTGAATACGATGTTGTCATCTCCTAATTTAGCAGCAACAAAGGTAGAACTTGAGAGGCCTAATTATGGTGTAGTGAATGAAAGCAGATCAAATGTTAGTGGATgtgtgaataataataattataatagcaGTTCAGCAgctaaaaaGACACAGGTTGTAGGTTGGCCTCCAATAAGATCATTTAGGAAAAATTCACTGTCATGTACCACCAAGAACAACGATGAAGTAGATGGGAAAGCCATGTTCGTGAAGGTGAGTTTGGATGGAGCTCCATATCTAAGGAAAGTGGACTTGAACAACTATTGTTCATACCCACAACTATCTTCTTCTCTGGAGAAAATGTTCACTTGTTTTACCATAGGTCATCATGGAAGTGTGGGGAAGGATGTGATTCATGGATCGGAATATGTTCTTACTTATGAGGACAAAGATAGTGATTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTTATTGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGATGCCATTGGTTTAGCTCCCAGGGCAGTGGAAAAATGTAAGAGCAGGAAGTGCATTGAATTTCACACGAAGCTTGTTTAG 1032 0.4021 MFPPPLVEEKEKEGEGESNVSLLCSSTITMELEMESVCLKNYIGMGLSDSSSVDSSLLSSFSDERKKSKLNLKATELRLGLPGSSSPERQDHSDHHHLFLTSSTTQFDEKPLFPLCPSKNPILGNKRGFSDAMTGFSEGKFLVNSEVNTMLSSPNLAATKVELERPNYGVVNESRSNVSGCVNNNNYNSSSAAKKTQVVGWPPIRSFRKNSLSCTTKNNDEVDGKAMFVKVSLDGAPYLRKVDLNNYCSYPQLSSSLEKMFTCFTIGHHGSVGKDVIHGSEYVLTYEDKDSDWMLVGDVPWEMFIETCRRMRIMKSSDAIGLAPRAVEKCKSRKCIEFHTKLV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3129 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 157 328 IPR003311 GO:0005634|GO:0006355
Sto9g3129 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 152 IPR003311 GO:0005634|GO:0006355
Sto9g3129 343 Pfam AUX/IAA family 75 325 IPR033389 -
Sto9g3129 343 Gene3D - 220 328 - -
Sto9g3129 343 ProSiteProfiles PB1 domain profile. 226 316 IPR000270 GO:0005515
Sto9g3129 343 SUPERFAMILY CAD & PB1 domains 221 315 - -
Sto9g3129 343 PANTHER AUXIN-INDUCED PROTEIN 29 152 - -
Sto9g3129 343 PANTHER AUXIN-INDUCED PROTEIN 157 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3129 Sto-Chr9 31918285 31919750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3129 176 318 B3 DNA Binding Superfamily AT5G20730 28.758 7.27e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto9g3129 AUX_IAA 3.6e-74 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3129 K14484 - jre:109011815 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3129 9 31918285 31919750 Sto9g3129 9 31918285 31919750 ECH