Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3115 ATGGAGCCGCTAAAGGTGGAAATGGCTATCAATGGACCAGTGTCGATAGAGTGGGCCATGCTGAATACTGGAAGTTGTATGGAGCCGCCAAAAAAAGTGGAAAGGGCTATCAATGGACCAGTGTCGATAGAGTGGGCCATGCTGAATACTGGAAGTTGTATGGAGCCGCCAAAAAAAGTGGAAAGGGCTATCAATGGACCAGTGTCGATAGAGTGGGCCATGCTGAATACTGGAAGTTGGTTTACTGGAATGGGGAGAGGGAAGATCGTTATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACGTTCTCGAAACGACGGAACGGTTTGCTTAAGAAGGCGAAGGAGCTGGCAATCCTGTGCGACGCTGAGGTTGGAGTAATGATCTTCTCCAGCACTGGCAAGCTCTACGATTTCTCCAGCTCCAGGTTTCAGTTTCCCAGCATTGTCACTGGTTTGCTGAATTGTTGA 474 0.4916 MEPLKVEMAINGPVSIEWAMLNTGSCMEPPKKVERAINGPVSIEWAMLNTGSCMEPPKKVERAINGPVSIEWAMLNTGSWFTGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSSRFQFPSIVTGLLNC 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3115 157 ProSiteProfiles MADS-box domain profile. 84 144 IPR002100 GO:0003677|GO:0046983
Sto9g3115 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 93 140 IPR002100 GO:0003677|GO:0046983
Sto9g3115 157 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 84 145 - -
Sto9g3115 157 SUPERFAMILY SRF-like 85 144 IPR036879 GO:0003677|GO:0046983
Sto9g3115 157 CDD MADS_MEF2_like 85 146 IPR033896 GO:0000977|GO:0045944
Sto9g3115 157 ProSitePatterns MADS-box domain signature. 86 140 IPR002100 GO:0003677|GO:0046983
Sto9g3115 157 SMART madsneu2 84 143 IPR002100 GO:0003677|GO:0046983
Sto9g3115 157 PANTHER SERUM RESPONSE FACTOR HOMOLOG 84 145 - -
Sto9g3115 157 PRINTS MADS domain signature 86 106 IPR002100 GO:0003677|GO:0046983
Sto9g3115 157 PRINTS MADS domain signature 106 121 IPR002100 GO:0003677|GO:0046983
Sto9g3115 157 PRINTS MADS domain signature 121 142 IPR002100 GO:0003677|GO:0046983
Sto9g3115 157 Gene3D - 96 154 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3115 Sto-Chr9 31834963 31837359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3115 84 143 MADS-box Gene Family AT2G14210 90.000 2.14e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto9g3115 SRF-TF 6.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3115 K09264 - csin:114313566 121.709