Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3113 ATGTCGACCCCAGGGGTACGGTTGAACATTCAAGATCGTCATGTGGTGATGGATAACGGCATACTAAAAGTGACCTTATCAAAACCTGAGGGAATAGTCACAGGAATAGAATATAGTGGCATCGACAACTTGCTTGAAGTTCTGAACGAGGAATCTAATAGAGGGTACTGGGATCTTGTATGGAGCTCATCAGAAAGTACCGGAACCACTGGTAGATTTGATGTGATAAAGGGGACTGATTTTGGAGTGATAGTGGAAACTGAGGAGCAAGTTGAATTATCCTTCACAAGAACATGGGATGCCTCCTTGGAGGGGAAGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGTGCCGTGGTTCTTCTGGCTTCTACACCTATGCTATTTTTGAGCATTTAGAGGACTGGCCTGCTTTCAATCTTGACGAAACCAGAATAGCTTTTAAGCTCAGAAAAGAAAAGTTTCAATATATGCAAATGGCAGATgatagaaaaagagaaatgcCTCTCCCAGATGACCGATTACCACCAAGAGGCCAAGCCCTTGCCTACCCTGAGGCTGTTCTACTTGTTGATCCTATTGACTCACAATTGAAAGGAGAGgTGGACGACAAGTACCAATATTCATGCGACAACAAAGATAGCAAGGTGCATGGGTGGATCTGCATGGAGCCAGCAGTGGGATTCTGGTTAATAACACCCAGCAACGAGTTCCGATCTGGTGGGCCCCTCAAACAGAATTTGACTTCTCACGTGGGACCTACTACACTTGCTGTGTTCCTAAGTGCTCATTATAGCGGAGAAGATCTAGTGCCAAAATTCAAAGCTGGTGAGACATGGAAGAAGGTTTTTGGTCCAATTTTCATCTATTTGAATTCTTCCTCTGATGGACAAGACCCAGTAATTAAGCTATGGGAAGATGCTAAACTTCAGATGTTGATAGAAGTTGAAAGCTGGCCCTATAACTTTCCTGCTTCACAAGATTACCTTAAGTGGGACGAACGTGGCAATGTCAATGGCAGGCTTCTCGTCCGAGACAGGTATATTAGCGATGATGATATCTCAGCAAAAGGTGCTTATGTGGGCTTGGCTCCGCCAGGAGACGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGACTAAGGCAGACGATGATGGATATTTCTCCATCAGCAATGTACGCCCTGGTGACTATAATCTTTACGCCTGGGTGCCTGGTTTTATTGGTGACTATAAATATGATGTGGTTATGAACATAATTGAAGGTAGTAACATAGACGCAGGTGATCTTGTGTATGAACCTCCAAGAGGTGGTCCAACATTGTGGGAAATAGGCATCCCAGATCGCTCTGCTGCTGAGTTCTATGTTCCTGATCCTAATCCCAAATATATCAACAAGCTTTATGTTAATCATCCTGACAAGTTTAGGCAATACGGGTTATGGGAGAGATATGCAGAGTTGTACCCTGACAAAGACTTGATTTACACAGTTGGTGTTAGTGACTATACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATAATAATACATATCAAGGAACCACATGGCAGATCAAGTTTAAACTGGATAGTGTGAACAAGAGCAGTACCTATAAATTGCGAGTAGCTTTGGCGTCAGCAACATTTTCTGAACTGCAGGTTCGAGTGAATGATTCAAAGGCAAATCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCCATTGCAAGGCATGGGATTCATGGCTTGTATTGGCTTTACAGTGTGGATATATTGGGTGCTCGACTTGTGGAAGGAGATAACACCATCTTTTTGACACAGTCAAGAGGAAATAGTCCATTTCAGGGCATTATGTATGATTACATTCGTTTAGAAGGCCCCCCATCGTCTAGTTCCAACGCGAAGATCTAA 1935 0.4269 MSTPGVRLNIQDRHVVMDNGILKVTLSKPEGIVTGIEYSGIDNLLEVLNEESNRGYWDLVWSSSESTGTTGRFDVIKGTDFGVIVETEEQVELSFTRTWDASLEGKLVPLNIDKRFIMCRGSSGFYTYAIFEHLEDWPAFNLDETRIAFKLRKEKFQYMQMADDRKREMPLPDDRLPPRGQALAYPEAVLLVDPIDSQLKGEVDDKYQYSCDNKDSKVHGWICMEPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGETWKKVFGPIFIYLNSSSDGQDPVIKLWEDAKLQMLIEVESWPYNFPASQDYLKWDERGNVNGRLLVRDRYISDDDISAKGAYVGLAPPGDVGSWQRECKNYQFWTKADDDGYFSISNVRPGDYNLYAWVPGFIGDYKYDVVMNIIEGSNIDAGDLVYEPPRGGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDNNTYQGTTWQIKFKLDSVNKSSTYKLRVALASATFSELQVRVNDSKANRPLFSSGLIGRDNSIARHGIHGLYWLYSVDILGARLVEGDNTIFLTQSRGNSPFQGIMYDYIRLEGPPSSSSNAKI 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3113 644 Pfam Polysaccharide lyase family 4, domain II 358 429 IPR029413 -
Sto9g3113 644 CDD RGL4_M 335 434 IPR029413 -
Sto9g3113 644 SUPERFAMILY Starch-binding domain-like 354 419 IPR013784 GO:0030246
Sto9g3113 644 Pfam Rhamnogalacturonate lyase family 8 203 IPR010325 -
Sto9g3113 644 Gene3D - 442 633 - -
Sto9g3113 644 Gene3D - 7 312 IPR014718 GO:0030246
Sto9g3113 644 CDD RGL4_N 6 297 - -
Sto9g3113 644 Pfam Polysaccharide lyase family 4, domain III 444 632 IPR029411 -
Sto9g3113 644 SUPERFAMILY Galactose-binding domain-like 442 633 IPR008979 -
Sto9g3113 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 638 - -
Sto9g3113 644 CDD RGL4_C 446 633 - -
Sto9g3113 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 638 - -
Sto9g3113 644 SUPERFAMILY Galactose mutarotase-like 13 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Sto9g3113 644 Gene3D - 334 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3113 Sto-Chr9 31809172 31820361 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3113 6 635 Polysaccharide Lyase AT1G09890 73.460 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3113 K18195 - gmx:100814721 1168.3