Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3111 ATGTCATCCCCAGGAGTGCGATTGGATATTCAAGATAAGCAAGTGGTATTGGATAATGGCATAGTCCAGGTCACCTTATCAAATCCTCAAGGGTTAGTCACCGGAATTCAATACAATGGGATTGAGAATCTCCTCGAAGTTCTTAACAAGGAGTTTGACAGAGGGTACTGGGATATTGTGTGGGACGAGGCTAATAATAAAGGAACAAAGGGTAAATTTGATAGgATGGAAGCCACTAATATGACAGTAATAGTTGAAAATGAAGAACAAATAGAGTTATCATTCACCAGAATGTGGCTCCCTTCTCTCAAGGGAATGCTTCCACccctcaatattgataaaagATTTGTCATGCTTCGTGGGTCATCAGGCTTCTACACCTATGCCATCTACGAGCATTTGAAGGAATGGCCTTCCTTCAATCTTGACAATACTAGGATTGCATTCAAGCTTCGAAAAGACAAGTTCCATTACATGGCTATAGCGGACAACAGACAAAGATTCATGCCTCTACCTGATGACCGTTCAAGAGAACGAGGGCAAGTTCTAGCTTATCCTGAGGCCGTTCGCTTTCTCAATCCTGTGGAGCCCGAGTTCAAAGGAGAGGTGGATGACAAATATCAGTACTCATGCGAGAGTCGCAACAATAGGGTTCATGGCTGGATTTGCATCGATCCATCTATTGGGTTCTGGCAAATTACACCCAGCTATGAGTTTCGATCTGCTGGGCCCCTCAAGCAATACCTTACTTCCCACGTGGGCCCCACCACCCTCTCCGTATTTCATAGCACGCATTACTCAGGAGCAGATCTAATAATGAAGTTTGGGCCCGATGAGCCATGGAAGAAAGTCTATGGGCCCATATTTATATACCTTAATTCTTTGTCTAACGGGGAAAGCCCGCGCAAGCTTTGGGAAGATGCTAAACAACAGATGGTCAATGAAATTGAAAGCTGGCCCTATGCATTTCCAGCTTCAAAAGACTTTCCCTCATCTGACCAACGCGGCAAGGTTAAAGGTAGATTACTTGTACGCGACAGGTATATAAGTGATGGGTCCGTCCCAGCAAGAGGTGCTTACGTGGGATTAGCGGCCATAGGAGATGCAGGATCGTGGCAGAGAGAATCCAAGGGTTATCAATTTTGGACCATCACTGATGATAAAGGCTATTTCTCCATCATTAACGCACGTGCTGGGGACTATAATCTCTACTCTTGGGTCACTGGATTTATTGGCGATTATCGATACGACAATGTCATTAACATAACCTCAGGTTGTGAAGTTGATGTGGGAGAAGTTGTTTATGAGCCTCCAAGAGATGGCCCTACATTGTGGGAAATAGGCATCCCTGATCGTTCTGCAGCTGAATTCTATGTCCCAGACCCAAATCCAAACTACATTAACAAGCTTTATGTCAATCATCCAGATAGGTTTAGGCAATATGGATTGTGGGAGAGGTATGCAGAGTTGTATCCTGAAGACTTAGTCTACACCATAGGCATTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAAGTTAACAGGAAGCAAGATAATAACACATACCAAGGAACCACATGGCGAATTAACTTCAAACTTGATGATGTAAACACAAATGGAACCTACAAGCTGCGATTGGCTCTCGCATCTGTGCATTCTGCTGAGCTACAAGTTCGGATAAACAGTTCGGAAGAAAACCCTGCTTTGTTCTCAAGTGGAGTGATTGGAAAGGAGAACACCATAGCTAGACATGGAATTCACGGGCTGTATTGGCTATTCAATATTGAAGTACAAGGCAGTCTTCTTGTGCAGGGGAATAATACCATCTTTCTAACTCAATCACAAACCACTAGTCCTTTTCAAGGGATTTTGTATGATTATATTCGCTTAGAAGGGCCTTCTTCTGTATCACATACATAA 1920 0.4307 MSSPGVRLDIQDKQVVLDNGIVQVTLSNPQGLVTGIQYNGIENLLEVLNKEFDRGYWDIVWDEANNKGTKGKFDRMEATNMTVIVENEEQIELSFTRMWLPSLKGMLPPLNIDKRFVMLRGSSGFYTYAIYEHLKEWPSFNLDNTRIAFKLRKDKFHYMAIADNRQRFMPLPDDRSRERGQVLAYPEAVRFLNPVEPEFKGEVDDKYQYSCESRNNRVHGWICIDPSIGFWQITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMKFGPDEPWKKVYGPIFIYLNSLSNGESPRKLWEDAKQQMVNEIESWPYAFPASKDFPSSDQRGKVKGRLLVRDRYISDGSVPARGAYVGLAAIGDAGSWQRESKGYQFWTITDDKGYFSIINARAGDYNLYSWVTGFIGDYRYDNVINITSGCEVDVGEVVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYVNHPDRFRQYGLWERYAELYPEDLVYTIGISDYRKDWFFAQVNRKQDNNTYQGTTWRINFKLDDVNTNGTYKLRLALASVHSAELQVRINSSEENPALFSSGVIGKENTIARHGIHGLYWLFNIEVQGSLLVQGNNTIFLTQSQTTSPFQGILYDYIRLEGPSSVSHT 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3111 639 Pfam Rhamnogalacturonate lyase family 10 203 IPR010325 -
Sto9g3111 639 Pfam Polysaccharide lyase family 4, domain III 443 630 IPR029411 -
Sto9g3111 639 Gene3D - 7 271 IPR014718 GO:0030246
Sto9g3111 639 Gene3D - 331 431 - -
Sto9g3111 639 SUPERFAMILY Starch-binding domain-like 332 430 IPR013784 GO:0030246
Sto9g3111 639 SUPERFAMILY Galactose-binding domain-like 440 631 IPR008979 -
Sto9g3111 639 Gene3D - 441 631 - -
Sto9g3111 639 CDD RGL4_M 334 431 IPR029413 -
Sto9g3111 639 CDD RGL4_C 445 631 - -
Sto9g3111 639 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 632 - -
Sto9g3111 639 Pfam Polysaccharide lyase family 4, domain II 356 429 IPR029413 -
Sto9g3111 639 CDD RGL4_N 11 294 - -
Sto9g3111 639 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 3 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3111 Sto-Chr9 31800155 31803848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3111 6 634 Polysaccharide Lyase AT1G09890 65.615 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3111 K18195 - gmx:100786488 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3111 9 31800155 31803848 Sto9g3111 9 31800155 31803848 ECH