Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3110 ATGTCATCACAGGCTGTGCAGTTGCATATAGAAGACGATTGTGTGATAATGGACAATGGCATAGTGCAAGTGTACATATCCAAACCGGGAGGATTTGTAACCAGAATACAATATAATGGCATTGATAATCTGCTTGAAATTCTTAACGAAAGTGATAATAGAGGGTATTGGGACCTCGTTTGGAGTGAAGCAGGAAGTACAGGAACAACTGGGATAACCGAGCCGATCGTTGGAACGTGTTTTGATgtgaaagtggaaaatgaggaACAGGTGGAGATCTCATTTACTAGAATGTGGGATCCATGTCTAGAAGGAGAGCTTTCGCCATTAAATATAGACAAaagGTATGTAATGCTTCGTAATTCCTCAGGCTTCTATTCTTACGCCATTTTTGAACACTTACAAGAGTGGCCTGCTTTCAATATACCCCAGATCAGGATCGTGTTCAAGCTACAAAAGGACAAGTATCATTACATGGCCATAGCGGATAATAGGCAAAGATGCATGCCTCTTCCAGAGGATAGATTACCTGACAGAGGAGAAGAACTAGCCACCCCAGAAGCAGTTTGGCTTGTCAATCCCATAGAGTCAGAGTTCCTGGGAGAGGTGGATGACAAGTACCAATACTCGAGCGACAACAAAGATCTGAAGGTACATGGATGGATAAGCATAAGCTGCACAACCGAAACGTCTGAACCGCCCAGTCCCACGGGGTTCTGGGTCATCATACCCAGCAATGAATTCCGTTCAGGAGGACCCGTTAAACAAAACCTAACCTCCCATGTGGGCCCCATCAGTCTTGCAATGTTTCTTAGTGCTCATTACGCAGGCGAGGATCTAGTTCTCAAACTCCAACCCAATGAGCCATGGAAAAAAGTTTTGGGACCAGTCTTTGTGTATGTCAACACTTTGTTGGATGATCAAGAAGACCCACTATGGCTCTGGGAGGATGCCAAAGATCagATGACGAAGGAAGTCCAAAGTTGGCCATATGATTTTCCAGACTCAGTAGATTTCCAGAAGTCTGACCAACGAGGCAGCGTTTGTGGCACACTACGAGTCCGAGACATGTACCTAAATATCGATGATTGTATATTGGCTAATGGTGCATACGTAGGACTTGCACCACCAGGAGACGCTGGATCATGGCAAATAGAATGCAAGGGATACCAATTCTGGACTAGAGCAGACGAGGAAGGCTACTTCTCTATTGACAATATACGTAGTGGGGACTATAATCTCTACGCATGGGTCCCTGGTTTCATTGGAGAATATTGGAACAATCTTGTCCTTACTATCACCCCAgGGTGTGAAATAAATGTTGGTGACATTACTTATGAACCCCCAAGAGATGGTCCAACATTGTGGGAGATAGGTATTCCTGATCGCTCTGCTGCTGAATTCTATGTCCCTGATCCTGATCCAAAATACATAAACAAGCTTTATGTCAACCATCCAGACAAGTTCAGGCAGTATGGTTTGTGGGAAAGATACGCTGAACTATACCCAAATGAAGATTTAGTTTATACAGTTGGCGTTAGTGACTATGAAAATGATTGGTTCTTTGCACAAGTTACCAGGATGAAAGAGCATAGCACATACGAGGGAACCACATGGCAAATTAGGTTCAAGCTTGATTATGTTAATACAAGTGGAATCTATAAACTACGATTGGCGCTTGCAACTGCACATGAAGCCGAATTACAGGTCAGAGTGAATGACCCAAACCAAGATCCTCCTATATTCACAACTGGGGAGATTGGGAATGATAACACAATTGCTAGACATGGAATCCATGGTCTCTATTGGCTATACAACATTGATGTGTCAGGTCTTATGCTGATGGAAGGCGATAATGTTTTGTACCTTACACAGACTAGAGCTACGGGTCCCTTCCAGGGGATCATCAGCATCAGTAGCCTCCACCTGCATCTTCGCAGTCTCAAGCTGAGCTGCGGTTACTTCCTCCTCATTTCTCGCCTTCATCTTCTttACGACGTCGTCTTGTGCTTTCGCTCTGAGTTCATGGTCGATGCTGGGGACAAAAGACCGATCTCTTCCATCCTTGCAGCTGCACAAGGTACTGATAGAATGAATGCATAG 2103 0.4379 MSSQAVQLHIEDDCVIMDNGIVQVYISKPGGFVTRIQYNGIDNLLEILNESDNRGYWDLVWSEAGSTGTTGITEPIVGTCFDVKVENEEQVEISFTRMWDPCLEGELSPLNIDKRYVMLRNSSGFYSYAIFEHLQEWPAFNIPQIRIVFKLQKDKYHYMAIADNRQRCMPLPEDRLPDRGEELATPEAVWLVNPIESEFLGEVDDKYQYSSDNKDLKVHGWISISCTTETSEPPSPTGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLQPNEPWKKVLGPVFVYVNTLLDDQEDPLWLWEDAKDQMTKEVQSWPYDFPDSVDFQKSDQRGSVCGTLRVRDMYLNIDDCILANGAYVGLAPPGDAGSWQIECKGYQFWTRADEEGYFSIDNIRSGDYNLYAWVPGFIGEYWNNLVLTITPGCEINVGDITYEPPRDGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDKFRQYGLWERYAELYPNEDLVYTVGVSDYENDWFFAQVTRMKEHSTYEGTTWQIRFKLDYVNTSGIYKLRLALATAHEAELQVRVNDPNQDPPIFTTGEIGNDNTIARHGIHGLYWLYNIDVSGLMLMEGDNVLYLTQTRATGPFQGIISISSLHLHLRSLKLSCGYFLLISRLHLLYDVVLCFRSEFMVDAGDKRPISSILAAAQGTDRMNA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3110 700 PANTHER LG27/30-LIKE GENE 1 636 - -
Sto9g3110 700 Gene3D - 341 440 - -
Sto9g3110 700 SUPERFAMILY Starch-binding domain-like 382 442 IPR013784 GO:0030246
Sto9g3110 700 Pfam Rhamnogalacturonate lyase family 5 203 IPR010325 -
Sto9g3110 700 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 636 - -
Sto9g3110 700 Pfam Polysaccharide lyase family 4, domain II 368 440 IPR029413 -
Sto9g3110 700 Gene3D - 452 637 - -
Sto9g3110 700 Pfam Polysaccharide lyase family 4, domain III 454 636 IPR029411 -
Sto9g3110 700 Gene3D - 5 280 IPR014718 GO:0030246
Sto9g3110 700 CDD RGL4_M 344 444 IPR029413 -
Sto9g3110 700 CDD RGL4_N 15 303 - -
Sto9g3110 700 SUPERFAMILY Galactose-binding domain-like 451 635 IPR008979 -
Sto9g3110 700 CDD RGL4_C 456 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3110 Sto-Chr9 31794210 31798427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3110 1 636 Polysaccharide Lyase AT1G09890 63.994 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3110 K18195 - gmx:100815677 1028.08