Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3099 ATGGGAAATAGAGTCAAACACAACTCAGCCAAGTTTTGGCTTACCAGTCGACTCCACGAGCTTACCAAATACAGGGTTACTTTCAAGAATGCCCAGACCATTTTACCTACAGCCTTCATCGCCAGCCGTTGGATCGCCTCTATAAGCGATTTTTCTTGCTGCCTCACCTCTTTGCAGTGTAGATCGTCGTTGACGTCCTCCATGGGTCCACTGATACACAACCCAGGTTCTGGTTCAGCTTGTGCCGCGTGGGGATTTTGGAGGAAATTGATGGCAGCCGTGAATCCACAGCCTTTGCAGGCGCGACCGTTCGAGGAACACGTGCAAGGCCCTCTACCGGTGGAGGACGATGACGGTGACTATGAGGATGGTGGTGGGAGTGGAGTTGGTAGTGGTGATGCTATGGATGATATGGAAGAAGCAAATGCTAATTCAGTGACCGTCGCGAACCATGGGGGAATTGTTACGATGTCCCGTACCAGTGAGCTCACTCTTTCTTTTGAGGGCGAGGTTTACGTGTTTCCTGCTGTGACACCTGAGaagGTGCAAGCAGTTTTGCTGCTTTTGGGTGGACGTGATGTGCCTGCTGGCGTTCCCGCTGTTGAAGTACCATTTGATCAAAGTAACAGGggtatgggtGACACTCCAAGGCGATCAAACCTTTCAAGAAGAATAGCCTCCTTGGTTAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAGATCAGATACACTGTGCGAAAAGAGGTGGCACAGAGGATGCATCGCAAGAATGGGCAGTTTGCTTCTTTGAAAGAAAGTCCAGGTTCATCTAACTGGGATTCTGCAGAGACCTTTCGTCAGGACGGCACTCCTCATTCTGAAACTGTACGGAGATGTCAACATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGACCAGCTGGGCCTAGGACTCTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAGTAAGGGAGGAAAAAATCTATCTGTTGATCAAAGTGAACTGGAGACTCCTATTGATGTCAAGCCTACTATTCTGGAAGGAGAATTGCCTGGCGTCCATGAGGAGCAAAGAATTTCTGAAGATCCTTCCAAGGCTGTTGCTGAAGGATCTGATAATCATGCTATCAACCCCAGTGATGAGGAATTGCAATCTGCTGAACACTTCTCAAGCACACTGCCACTGGGCATTGTTTGTTCTTCAGCAAATGATGACGAGCAGGAGCCTCTGGTTGAGCTTTCTAGTCCTTCAGATACAGATATTGACATTCCTGGAAACTTTGATTAG 1329 0.4755 MGNRVKHNSAKFWLTSRLHELTKYRVTFKNAQTILPTAFIASRWIASISDFSCCLTSLQCRSSLTSSMGPLIHNPGSGSACAAWGFWRKLMAAVNPQPLQARPFEEHVQGPLPVEDDDGDYEDGGGSGVGSGDAMDDMEEANANSVTVANHGGIVTMSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPAGVPAVEVPFDQSNRGMGDTPRRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSAETFRQDGTPHSETVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGKNLSVDQSELETPIDVKPTILEGELPGVHEEQRISEDPSKAVAEGSDNHAINPSDEELQSAEHFSSTLPLGIVCSSANDDEQEPLVELSSPSDTDIDIPGNFD 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3099 442 Gene3D - 287 347 IPR013088 GO:0006355|GO:0008270
Sto9g3099 442 MobiDBLite consensus disorder prediction 365 442 - -
Sto9g3099 442 MobiDBLite consensus disorder prediction 109 133 - -
Sto9g3099 442 ProSiteProfiles CCT domain profile. 224 266 IPR010402 GO:0005515
Sto9g3099 442 Pfam CCT motif 224 265 IPR010402 GO:0005515
Sto9g3099 442 MobiDBLite consensus disorder prediction 265 285 - -
Sto9g3099 442 PANTHER GATA TRANSCRIPTION FACTOR 28 91 442 IPR045280 GO:0006355
Sto9g3099 442 ProSiteProfiles GATA-type zinc finger domain profile. 289 348 IPR000679 GO:0006355|GO:0043565
Sto9g3099 442 MobiDBLite consensus disorder prediction 264 288 - -
Sto9g3099 442 ProSiteProfiles Tify domain profile. 156 191 IPR010399 -
Sto9g3099 442 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 288 340 - -
Sto9g3099 442 Pfam tify domain 159 190 IPR010399 -
Sto9g3099 442 ProSitePatterns GATA-type zinc finger domain. 295 322 IPR000679 GO:0006355|GO:0043565
Sto9g3099 442 SMART tify_2 156 191 IPR010399 -
Sto9g3099 442 SMART GATA_3 289 342 IPR000679 GO:0006355|GO:0043565
Sto9g3099 442 MobiDBLite consensus disorder prediction 391 412 - -
Sto9g3099 442 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 91 442 - -
Sto9g3099 442 CDD ZnF_GATA 294 341 IPR000679 GO:0006355|GO:0043565
Sto9g3099 442 MobiDBLite consensus disorder prediction 365 382 - -
Sto9g3099 442 Pfam GATA zinc finger 295 331 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3099 Sto-Chr9 31704516 31710887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3099 130 359 Tify Gene Family AT1G51600 49.042 1.28e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto9g3099 CCT 1.8e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3099 - - gmx:100801328 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3099 9 31704516 31710887 Sto9g3099 9 31704516 31710887 ECH