Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3098 ATGAATGCTACTAATCGGATCAGCACCTCCGAGGATGATGACGGTGCCGGCGTTGGCGCCGAGTCCATTGAAAATCACCACATTCATTACGAGACACAAGCTCTCGAAGATGGTAGCGGTGGAGTTGGTGGCATGGTGGAGGATGTTAATTCCGACGCCGTGTATGTTTCTGGCAGTGGTTCTGAATTGTCCCTCCATCACGACGATTCTAGCCAACTTACGCTGTCGTTTCGTGGCCAAGTGTATGTTTTTGACTCTGTTACACCTGATAAGGTTCAAGCAGTATTATTACTGTTAGGTGGATGTGAACTACCTTCGGGTTCGCAATGTGGGGATGTAGCAACTCAAAGTCAGAGGGGTGCAATGGAATACCCTGTAAAATGTAGTCAACCACACCGAGCAGCCTCTTTAAGTAGGTTCAGGCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGCGTACGTCAAGAAGTTGCCCTCAGGATGCACCGTAATAAGGGCCAATTTACTTCGTCCAAGAAACAAGATGGATCTAATAGTTGGGGTGCAGTCCAGGAGTCAGGGCAGGATGATGGTCAATCAGAAACCTCATGCATGCATTGTGGCACAAGTTCAAAATCGACCCCAATGATGCGGCGAGGACCATCTGGTCCAAGGTCACTCTGTAATGCTTGTGGACTTTTTTGGGCAAATAGGGTATGGGGCTTGCTTATAGTTTCTAGTTTGGCATATCGTATTTGGTTTGCTATCGGCTGGGAAGCTGGTACTTTGAGGGACCTTTCTAAGAAGAACCAGGAACATTCTCTTGCACCAGCTGAGCAGGTTGATGAATGTAATGATTCAGACCGCGGGACTGCACATAACAGTATCGTGCCTTTCTCTGATAATGATAATCCAGCATAG 912 0.4704 MNATNRISTSEDDDGAGVGAESIENHHIHYETQALEDGSGGVGGMVEDVNSDAVYVSGSGSELSLHHDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELPSGSQCGDVATQSQRGAMEYPVKCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGSNSWGAVQESGQDDGQSETSCMHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRVWGLLIVSSLAYRIWFAIGWEAGTLRDLSKKNQEHSLAPAEQVDECNDSDRGTAHNSIVPFSDNDNPA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3098 303 SMART tify_2 66 101 IPR010399 -
Sto9g3098 303 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355|GO:0043565
Sto9g3098 303 Pfam tify domain 70 100 IPR010399 -
Sto9g3098 303 MobiDBLite consensus disorder prediction 174 214 - -
Sto9g3098 303 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Sto9g3098 303 MobiDBLite consensus disorder prediction 270 303 - -
Sto9g3098 303 PANTHER GATA TRANSCRIPTION FACTOR 28 10 285 IPR045280 GO:0006355
Sto9g3098 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 235 - -
Sto9g3098 303 MobiDBLite consensus disorder prediction 168 217 - -
Sto9g3098 303 ProSiteProfiles CCT domain profile. 133 175 IPR010402 GO:0005515
Sto9g3098 303 Pfam GATA zinc finger 201 234 IPR000679 GO:0006355|GO:0043565
Sto9g3098 303 CDD ZnF_GATA 200 235 IPR000679 GO:0006355|GO:0043565
Sto9g3098 303 ProSiteProfiles Tify domain profile. 66 101 IPR010399 -
Sto9g3098 303 PANTHER GATA TRANSCRIPTION FACTOR 25 10 285 - -
Sto9g3098 303 MobiDBLite consensus disorder prediction 287 303 - -
Sto9g3098 303 SMART GATA_3 195 249 IPR000679 GO:0006355|GO:0043565
Sto9g3098 303 Gene3D - 191 272 IPR013088 GO:0006355|GO:0008270
Sto9g3098 303 Pfam CCT motif 133 175 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3098 Sto-Chr9 31699118 31702676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3098 5 278 Tify Gene Family AT4G24470 49.147 6.98e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto9g3098 CCT 3.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3098 - - pvu:PHAVU_008G182900g 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3098 9 31699118 31702676 Sto9g3098 9 31699118 31702676 ECH