Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3084 atgGATACTTCATCGGGTAAGGGTCGGATtaagggaggaggaggagagcaAGCTACAACTAATGTAGAATTGggagatatgatatatatcaagcTTCGTGGTGACTCATGGTGGCCTGCACAGGTTGTTGATGAGAATACTGTTAGTGAGAATGTTAAACCTGGCAAAGGATCAGCAGGGAAAGTTCTTGTTAGGCTCTTGTATGTGGATCCTGTTAAATCTCGTTCTGAGTTTGAGAAGGATCTTCCTTGCGCAAAACCCAGCAGATCAAAGAATTCAGGATCGAAGACTAAAGGTGCACTGACAGGGGATGTTGATCTTACCTTCCTAATTTTTGTTAACTCTCCAGATGTTGTCGGCGCCGCCGTAGCTAGGAGTGATCGATCAAGTTTCGATGGGTATGAAGACTCGTTAGATCATTATCTTCAAGAACCGAGGCCGTTGATCAGATCAAATCCAATAATGGAATTGGACGGTGGGAGATCGACTCTGAGCTCAGCATCAAAGTCTGTGAGGAAACCATCATACGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCCGCCAGCGAATCAACGCCCACCTCTCCACTCTACGCTCTCTTCTCCCTAACGCCCCTAAGTCAGATAAGGCATCGTTGCTGGCCGAAGTGGTCCAACACGTGAAAGAGCTGAGGAAGCAGGCGGATGACGTGGCGCGTCGTCACGACGGATACTTATCGTGCGGCAGCAGCAGCGGTGGTGAATCCGGGTCCGATCAGACCGCAGAAACTGACCCGTGGCCGTTCCCGGGCGAGGCAGATGATGCAACTCTGAGCTATTGTGAGGGTGCTGAGGAACCCAAGCTAATGAAAGCTACGGTAAACTGCGAGGACCGGCCTGGATTAAACCGGGATCTAACACAGGCAATACGGTCGGTTCGAGCTAAGGCGGTTCGGGCTGAGATGATGACGGTTGGTGGCCGGACCAAGAGTGTTGTTATAATGCAGTTGCCCGATGAGGGAGAAGAAGACTTTGGGGCACTGGAACGGGCTTTGAAGGCTGTGGTGGAGAATCGGGCGCTGCGTGGCGATAACATCGTCTTCCGAGACTATCGTGGTGAAGTACAAAAAGGAAGTGCAGAGATATTTTTCCGCAAAGTGAAATTTTGGAAAGATGATGGGCAAGAGGAAGCACCCCCTGTCTTTAATGTGGATGGAGTAAACTACTTTCACGTGAAGGTTGTTGGGCTTTTGTTTGTTGCAACCACAAGGATTAATATATCACCTTCTTTTGTCTTGGAGCTCTTACAAAGGATTGCTCGTGTTATCAAAGATTACCTTGGGGTTCTCAGTGAAGAATCATTAAGAAAGAACTTTGTGCTTGTGTATGAGTTGCTGGATGAAGTCATTGACTTTGGTTATGTGCAAACAACATCTACTGAAATGTTGAAATCCTATGTTTTCAATGAGCCAATTGTGGTTGATGCTGCACGTCTGTCACCTCTTGGGCCTGCTACAATTTTTGTGCAAGGGACAAAAAGAATGCCAGGGACAGCTGTCACAAAATCTGTTGTAGCAACCGAGCCTGGGGGTAAAAGAAGGGAGGAAATCTTTGTAGATATAATTGAGAAAATCAGCATTACTTTTAGCTCCAGTGGATATATACTAACTTCTGAGATTGATGGCACCATACAAATGAAGAGCTATCTTTCTGGAAATCCTGAAATTCGATTAGCACTTAATGATGACCTTGCCATAGGAAGAGGCCAGGGACCAACCTACGGTTATAATAGTTCAACTGGTTCCGGATCAGTGATATTGGATGATTGTAATTTCCATGAATCTGTTCGTCTTGATAGTTTTGATATGGACAAAACTCTGACCCTGATACCACCAGATGGTGAATTTCCTGTCATGAACTACCGTATGACACAGGAGTTTAGGCCTCCTTTTCGTATCAATACTTTGATTGAAGAAGCAGGAACCCTTAAGGCTGAGGTTATTCTTAAAGTATACGCTGAGTTTGCCTCAAGTATAACTGCAAACACTATAAAAGTGCAGATGCCACTACCAACTTATACCACCAGAGTTAGTTATGAGCTGGAATCTGGAGCTGTTGGTCAAACTACCGATTTTAAAGAAGCAAATAAGAGACTAGAATGGAGTTTAAAGAAGGTAAAATACTTGCAAATAGCGAAGAAATCTGGTACCTATGAGCCATATCGATGGGTGAGATATGTTACACAGGCAAATTCCTATGTTGCTCGTATATGA 2259 0.444 MDTSSGKGRIKGGGGEQATTNVELGDMIYIKLRGDSWWPAQVVDENTVSENVKPGKGSAGKVLVRLLYVDPVKSRSEFEKDLPCAKPSRSKNSGSKTKGALTGDVDLTFLIFVNSPDVVGAAVARSDRSSFDGYEDSLDHYLQEPRPLIRSNPIMELDGGRSTLSSASKSVRKPSYEACKSHREAERRRRQRINAHLSTLRSLLPNAPKSDKASLLAEVVQHVKELRKQADDVARRHDGYLSCGSSSGGESGSDQTAETDPWPFPGEADDATLSYCEGAEEPKLMKATVNCEDRPGLNRDLTQAIRSVRAKAVRAEMMTVGGRTKSVVIMQLPDEGEEDFGALERALKAVVENRALRGDNIVFRDYRGEVQKGSAEIFFRKVKFWKDDGQEEAPPVFNVDGVNYFHVKVVGLLFVATTRINISPSFVLELLQRIARVIKDYLGVLSEESLRKNFVLVYELLDEVIDFGYVQTTSTEMLKSYVFNEPIVVDAARLSPLGPATIFVQGTKRMPGTAVTKSVVATEPGGKRREEIFVDIIEKISITFSSSGYILTSEIDGTIQMKSYLSGNPEIRLALNDDLAIGRGQGPTYGYNSSTGSGSVILDDCNFHESVRLDSFDMDKTLTLIPPDGEFPVMNYRMTQEFRPPFRINTLIEEAGTLKAEVILKVYAEFASSITANTIKVQMPLPTYTTRVSYELESGAVGQTTDFKEANKRLEWSLKKVKYLQIAKKSGTYEPYRWVRYVTQANSYVARI 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3084 752 SUPERFAMILY SNARE-like 357 487 IPR011012 -
Sto9g3084 752 Gene3D - 176 238 IPR036638 GO:0046983
Sto9g3084 752 Pfam Helix-loop-helix DNA-binding domain 179 226 IPR011598 GO:0046983
Sto9g3084 752 ProSiteProfiles Mu homology domain (MHD) profile. 529 752 IPR028565 -
Sto9g3084 752 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 356 721 - -
Sto9g3084 752 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 721 752 - -
Sto9g3084 752 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 528 751 IPR036168 -
Sto9g3084 752 Gene3D Mu homology domain, subdomain B 526 679 - -
Sto9g3084 752 MobiDBLite consensus disorder prediction 159 188 - -
Sto9g3084 752 CDD AP4_Mu_N 357 489 - -
Sto9g3084 752 MobiDBLite consensus disorder prediction 79 98 - -
Sto9g3084 752 MobiDBLite consensus disorder prediction 238 265 - -
Sto9g3084 752 Pfam PWWP domain 25 67 IPR000313 -
Sto9g3084 752 SMART finulus 183 232 IPR011598 GO:0046983
Sto9g3084 752 Gene3D - 354 487 - -
Sto9g3084 752 Gene3D - 286 353 - -
Sto9g3084 752 SUPERFAMILY Tudor/PWWP/MBT 20 65 - -
Sto9g3084 752 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 622 636 IPR018240 GO:0006886|GO:0016192|GO:0030131
Sto9g3084 752 Gene3D - 15 79 - -
Sto9g3084 752 PRINTS Clathrin coat assembly protein signature 358 378 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto9g3084 752 PRINTS Clathrin coat assembly protein signature 447 474 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto9g3084 752 PRINTS Clathrin coat assembly protein signature 602 629 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto9g3084 752 PRINTS Clathrin coat assembly protein signature 671 686 IPR001392 GO:0006886|GO:0016192|GO:0030131
Sto9g3084 752 ProSiteProfiles PWWP domain profile. 24 87 IPR000313 -
Sto9g3084 752 Pfam Adaptor complexes medium subunit family 527 721 IPR028565 -
Sto9g3084 752 Coils Coil 216 236 - -
Sto9g3084 752 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Sto9g3084 752 MobiDBLite consensus disorder prediction 244 258 - -
Sto9g3084 752 SUPERFAMILY ACT-like 287 353 IPR045865 -
Sto9g3084 752 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 236 IPR036638 GO:0046983
Sto9g3084 752 CDD AP-4_Mu4_Cterm 520 752 - -
Sto9g3084 752 PANTHER AP COMPLEX SUBUNIT MU 356 721 - -
Sto9g3084 752 PANTHER AP COMPLEX SUBUNIT MU 721 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3084 Sto-Chr9 31590932 31606296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3084 147 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 37.500 3.36e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto9g3084 Adap_comp_sub 7.7e-49 CL0448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3084 K12402 - gmx:100807075 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3084 9 31590932 31606296 Sto9g3084 9 31590932 31606296 ECH