Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3060 ATGGAATTTGAGGAGGAGCACGAGCACGAAGAGGCAGAGGAAGAAATGGGGATTCCGGTGCCGCCGCCACCTCCGCCGCCTTTCGACTCCAGTCGCTCCAAAATGGGCGGTAGTGCTATCGGAGGCGAGGGAGGCGCATCCACCATGGCAGGTAGCAGAAAGAGCGGGTCCACAGGTTCAGTGAGGTACAGAGAATGTCAAAAGAACCATGCCGTCAGCATCGGTGGCCACGCCGTCGACGGTTGCGGCGAATTTCTGGCGGCCGGAGAGGAAGGCAGCCTGGACGCTCTTAAATGCGCCGCCTGTAACTGTCACCGCAACTTCCACCGTAAGGAGATCGAGGGAGAAATGAGCTCGTACCACCAGCTGCCGCCGCCGCCGCAGGcacaccaccaccatcaatttCCAGCGTACTACCGGGGACCGGCGGCGGGATACTTCCACCACCATTTGACGAGTGGGGGGATGGGGCATCAGCGGCCATTGGCTCTACCGGCGGCGGCATCGGGCGGCGGGGGAAGtagagaagaggaagacatgTCAAATCCGAGCAGCAGcggagggggaggaggaggattCGGGAGCGGAAGGAAGAAAAGGTTTAGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTTCAGAGAGGGTTGGGTGGAGAATCCAGAAGCATGACGAAGGTGCGGTGGAGCAATTCTGTGCGGAGACGGGTGTGAAGCGTCAAGTACTCAAGGAAAGTGGACTGTCACTACAAAATGCCAGCTTTGCTGATGACAGATATAAAACTCCCATTACAGGTCCAGCCGAGGTGGACAGAGATTCGAAAACACTCACTCTTGACGGAAGAGGGGGGTGGGTTGACGGGGGCAGGAGATACGTAGGGATTAGATTCCTGGGGCATGCTAGTGGCAGCATCGCCGGAAATCGGGGCACGCATTTCGGGGGTGGTAGGAGCATTGACTGGTGGTTGGGACATGGGAACGGAAGTCCAATTTTCCGGAGGTGGAGTCACATCGCTGGGTTCGAGTTTGGGATATGGAGCGTAATCGGAGGTGTGAGAATCTTTGGGTTCTGCTTTCGATGGCTTGGTGGGGTGTGTTTGATCACCGCTCATgtttcttcccttcccttccctatTAGGTTTTCTCTGCTTCGGGATCTTACGCTAACCCCCAAATCCTAA 1191 0.5315 MEFEEEHEHEEAEEEMGIPVPPPPPPPFDSSRSKMGGSAIGGEGGASTMAGSRKSGSTGSVRYRECQKNHAVSIGGHAVDGCGEFLAAGEEGSLDALKCAACNCHRNFHRKEIEGEMSSYHQLPPPPQAHHHHQFPAYYRGPAAGYFHHHLTSGGMGHQRPLALPAAASGGGGSREEEDMSNPSSSGGGGGGFGSGRKKRFRTKFTQEQKEKMLAFSERVGWRIQKHDEGAVEQFCAETGVKRQVLKESGLSLQNASFADDRYKTPITGPAEVDRDSKTLTLDGRGGWVDGGRRYVGIRFLGHASGSIAGNRGTHFGGGRSIDWWLGHGNGSPIFRRWSHIAGFEFGIWSVIGGVRIFGFCFRWLGGVCLITAHVSSLPFPIRFSLLRDLTLTPKS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3060 396 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 198 247 IPR006455 -
Sto9g3060 396 SUPERFAMILY Homeodomain-like 184 247 IPR009057 -
Sto9g3060 396 Pfam ZF-HD protein dimerisation region 61 113 IPR006456 -
Sto9g3060 396 MobiDBLite consensus disorder prediction 1 59 - -
Sto9g3060 396 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Sto9g3060 396 MobiDBLite consensus disorder prediction 152 198 - -
Sto9g3060 396 Gene3D - 184 248 - -
Sto9g3060 396 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Sto9g3060 396 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 50 247 - -
Sto9g3060 396 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3060 Sto-Chr9 31457277 31466903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3060 59 247 ZF-HD Transcription Factor Family AT4G24660 56.923 5.34e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto9g3060 ZF-HD_dimer 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3060 - - gmx:100776421 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0547 5 3483633 3485467 Sto9g3060 9 31457277 31466903 CCT
Sto9g3060 9 31457277 31466903 Sto9g3060 9 31457277 31466903 ECH