Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3053 atggcACTAGAGGCTGTAGTTTTCCCGCAAGATCCATTATTGGCATATAGTTACAAGGACTTATACTCCTCCTGTGTTTCTGCTTGGAACCATGACGAATATGTCTATGGTTTCCaggcagaagaagaagaagaagaaggggttgCTGGAGTTATGAACAAGAAGGAGCAGATGAGTGATGATGTTCATGCAACTTGGGATTCTAACTCCTCCCCTGAGGCCCACCAATCAGTCTCCCCTGCACCTTCCACGGCTCGCCGCAAACGACGTCGCAGCAAGAGCGCCAAGGACAAAGAGGAAATCGAGAACCAGAGAATGACTCACATTGCTGTGGAGCGAAAccgacgaaaacagatgaatgaCTACCTTGCTGTGCTCCGATCCTTGATGCCTCCTTCCTATGTTCAAAGGGGGGACCAAGCTTCTATAATAGGAGGCGCCATTAACTTCGTGAAGGAACTAGAACAGGTATTGCAGTCAATGGAGggacaaaagaaaacaaaggggAATGGTGGCTCTTcctctgcctctgcctctgcctTGGCAGAGTTCTTCACGTTCCCCCAGTACACAAGGCATGCAAATCACACCACTTGCACTTCCAACCACCACTGTGCGGTGGCCGACATAGAAGTGACCATGGTAGACACACATGCCAATCTCAAGATACTCGTCCAGAAACGAGAAGGACAGCTTACCAAGATGGTTGTGGCTCTTCAATCTCTCTGCCTCACCATTCTGCATCTCAATGTCACCACTCTAGACCACATGGTCTTTTACTCTCTTAACCTAAagCTTGAGGAAGGGTGTGAGCTGAATTCCGTGGATGAAATCGCTGCTGCTGTCAATCAACTATTGCGCAGAATCCAAGACGAAGCCGCTTTCAcctga 891 0.4287 MALEAVVFPQDPLLAYSYKDLYSSCVSAWNHDEYVYGFQAEEEEEEGVAGVMNKKEQMSDDVHATWDSNSSPEAHQSVSPAPSTARRKRRRSKSAKDKEEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQVLQSMEGQKKTKGNGGSSSASASALAEFFTFPQYTRHANHTTCTSNHHCAVADIEVTMVDTHANLKILVQKREGQLTKMVVALQSLCLTILHLNVTTLDHMVFYSLNLKLEEGCELNSVDEIAAAVNQLLRRIQDEAAFT 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3053 296 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 294 - -
Sto9g3053 296 Gene3D - 87 169 IPR036638 GO:0046983
Sto9g3053 296 PANTHER MAX DIMERIZATION, MAD 1 294 - -
Sto9g3053 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 167 IPR036638 GO:0046983
Sto9g3053 296 MobiDBLite consensus disorder prediction 63 83 - -
Sto9g3053 296 Pfam Helix-loop-helix DNA-binding domain 104 155 IPR011598 GO:0046983
Sto9g3053 296 CDD bHLH_AtFAMA_like 106 168 - -
Sto9g3053 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 154 IPR011598 GO:0046983
Sto9g3053 296 MobiDBLite consensus disorder prediction 58 104 - -
Sto9g3053 296 SMART finulus 109 160 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3053 Sto-Chr9 31407795 31408983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3053 1 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.053 1.33e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto9g3053 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3053 - - tcc:18591748 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0532 5 3387960 3389090 Sto9g3053 9 31407795 31408983 CCT
Sto9g3053 9 31407795 31408983 Sto9g3053 9 31407795 31408983 ECH