Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3051 ATGGCGCTACTTCGACTTCTCACCTTTCCTTCAACAACTGACCTCTCTACACAATGCCAACCCTCCTCACTATTGTCTCTTCACAATTCTCACCATCATCGATCTAATTCTTCCATCAACCATCTCTCTTTTTGTCTCCAACCCTCTTCCCATTTTCAACGTCTATCCCTTGTTCATACCCCTAACTTTGCCTCTGCATCCCAAGAACAGGCGCTTGATTCTTCTACTTCCAGTGTTTCCGTTGACAGCCAAGAAACCGAGGAGTTTTCTCGAACCAGGTTGCTTGCTCAGAACGTACCTTGGACTAGCACTCCTGAAGACATTCGTTCTTTGTTCGAGACATATGGAAAAGTCCTAGACGTTGAGCTGTCAATGTATAATGCGACTAGAAATAGGGGTTTGGCGTTCGTCGAAATGGGCTCGGAAGAAGAGGCTCTTGCGGCTTTCAACGGTCTAGAATCGAATGAATATGAAGGGCGCATACTAAAACTAGCTTATGCTAGGCCGAAAAAGAAGAGAGCTCCACCTCGTGTGCAACCGAAGATAGTgacatttaatttgtttgttgcAAATTTGTCCTATGAAGCGAGGGCCAAAGATCTCAAGGAGTTTTTTGATTCAGGAAGCGGTAGTGTTGTTTCTGCAGAGGTTATATTTCATGATAACCCTAGAAAGTCATCTGGGTATGGATTTGTGGCCTTCAAGTCCAAGAAACAAGCTGAGGCTGCTCTTACTGAGTTCCAAGGGAAGGAATTTATGGGAAGGCCAATCAGAGTGGAACGTAGTAGGCAATTTGTTAAACAACCAGAAAATGAGAGTGCTAAGTCTGGAGATACAACTTCTGAGTTGAGTGTGAATGGGGTAGAAGCAGATAAAGCTGATTGA 885 0.435 MALLRLLTFPSTTDLSTQCQPSSLLSLHNSHHHRSNSSINHLSFCLQPSSHFQRLSLVHTPNFASASQEQALDSSTSSVSVDSQETEEFSRTRLLAQNVPWTSTPEDIRSLFETYGKVLDVELSMYNATRNRGLAFVEMGSEEEALAAFNGLESNEYEGRILKLAYARPKKKRAPPRVQPKIVTFNLFVANLSYEARAKDLKEFFDSGSGSVVSAEVIFHDNPRKSSGYGFVAFKSKKQAEAALTEFQGKEFMGRPIRVERSRQFVKQPENESAKSGDTTSELSVNGVEADKAD 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3051 294 SMART rrm1_1 93 165 IPR000504 GO:0003723
Sto9g3051 294 SMART rrm1_1 186 260 IPR000504 GO:0003723
Sto9g3051 294 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 293 - -
Sto9g3051 294 MobiDBLite consensus disorder prediction 261 294 - -
Sto9g3051 294 PANTHER OS08G0483200 PROTEIN 1 293 - -
Sto9g3051 294 SUPERFAMILY RNA-binding domain, RBD 178 269 IPR035979 GO:0003676
Sto9g3051 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 258 IPR000504 GO:0003723
Sto9g3051 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 162 IPR000504 GO:0003723
Sto9g3051 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Sto9g3051 294 Gene3D - 60 176 IPR012677 -
Sto9g3051 294 MobiDBLite consensus disorder prediction 269 286 - -
Sto9g3051 294 SUPERFAMILY RNA-binding domain, RBD 71 177 IPR035979 GO:0003676
Sto9g3051 294 CDD RRM_SF 98 164 - -
Sto9g3051 294 Gene3D - 177 287 IPR012677 -
Sto9g3051 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3051 Sto-Chr9 31396204 31397705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3051 92 269 Eukaryotic Initiation Factors Gene Family AT3G16380 29.293 2.83e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3051 - - gmx:100790439 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3051 9 31396204 31397705 Sto9g3051 9 31396204 31397705 ECH