Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3032 ATGGATGAGCACCTGGCTTCTTCACATGCTGATCATCACACAAACTCTTATTCCATTAATCTTTTCCCCGTGACGAATCGTAATCAGCTTCAGCCTCTTCCTTTACTAAGCAGCTTCCTTGGTTCAAGTACTCCACTTACCACAAAACCTTATGATGGTGAGGAGGATGTGACAGTGGCCTTACACATAGGCCTCCCTCATAATAGTAATAATTCTACTGGCTCTTCGTCTCCCAAAGCAAAGAATGCAAGTTCAGCCCAAGCACCCATCAATTACTGGATACCAACCCAAGAGCAGATCCTGATTGGATTCAGCCACTTCTCTTGTCCTGTGTGCCTCAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGATCACAGTACCGAAGAGGAGCGGAGTCGCTGAAGCGAACACATCGACGACCGTTGTTGGAGATAGCGTGCTATTGCTGCGCAAGAGGATGCAAGAACAACATAGAGCACCCGAGGGCTAAGCCTCTGAAGGACTTTAGGACGCTTCAGACTCACTACAAGAGGAAGCATGGCACCAAGCCCTTCATGTGTCGCAAGTGTGCTAAGCCTTTGGCTGTCAAGGGTGACTGGCGAACCCATGAGAAAAACTGTGGCAAGCGTTGGCTTTGCGTTTGTGGCTCTGACTTCAAACACAAGAGATCCCTTAAAGACCACATCAAAGCATTTGGCTCTGCTCATtaccctttttcttcttcctcccatCCCAATCCCATCATCTGA 768 0.4648 MDEHLASSHADHHTNSYSINLFPVTNRNQLQPLPLLSSFLGSSTPLTTKPYDGEEDVTVALHIGLPHNSNNSTGSSSPKAKNASSAQAPINYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGAESLKRTHRRPLLEIACYCCARGCKNNIEHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCAKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPFSSSSHPNPII 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3032 255 Gene3D Classic Zinc Finger 106 129 - -
Sto9g3032 255 PANTHER ZINC FINGER PROTEIN WIP2 2 247 IPR043584 GO:0003700|GO:0010468
Sto9g3032 255 SUPERFAMILY beta-beta-alpha zinc fingers 102 129 IPR036236 -
Sto9g3032 255 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Sto9g3032 255 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 2 247 - -
Sto9g3032 255 Gene3D Classic Zinc Finger 168 247 - -
Sto9g3032 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Sto9g3032 255 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3032 Sto-Chr9 31248827 31249684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3032 18 248 C2H2 Transcription Factor Family AT1G34790 57.414 9.36e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto9g3032 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3032 - - vra:106763495 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3032 9 31248827 31249684 Sto9g3032 9 31248827 31249684 ECH