Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3031 ATGGCTTACCCACATTATCGATCACAGTTCGGCGACACAACATTCACCAAAGTGTTTGTTGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAAATATTTCGAGCAGTTCGGACACATTCTTGAGGCTGTTATAATCACTGATAAGAATACAGGAAAATCCAAAGGCTATGGATTCGTAACATTCCGGGATCCAGAATCAGCAAGAAGAGCTTGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCCCTGGGACGGCCTCGGCCTTCACCACCCCGAGGAAGGAATGTATTTCAAGGAGGAGGCACAGCGCAGAGTGCAGCGTCGTATGGTGGTGTTCCGGCAGCAGTAGCCCCGCCGCCGCCTCCGCCTCCGGCGCCGGTGCCGGTGATGTACCCGCCATATGGGTGA 438 0.516 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGHILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRNVFQGGGTAQSAASYGGVPAAVAPPPPPPPAPVPVMYPPYG 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3031 145 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Sto9g3031 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Sto9g3031 145 SMART rrm1_1 17 89 IPR000504 GO:0003723
Sto9g3031 145 PANTHER BOULE-RELATED 1 145 IPR037366 GO:0003729
Sto9g3031 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Sto9g3031 145 MobiDBLite consensus disorder prediction 124 145 - -
Sto9g3031 145 MobiDBLite consensus disorder prediction 91 145 - -
Sto9g3031 145 Gene3D - 3 112 IPR012677 -
Sto9g3031 145 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 145 - -
Sto9g3031 145 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3031 Sto-Chr9 31242889 31243518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3031 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 5.85e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3031 K25006 - gmx:100788516 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3031 9 31242889 31243518 Sto9g3031 9 31242889 31243518 ECH