Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3013 ATGACGAACCAGAATCTGGTGGTTTCTGATGTGGAATCAGGTATTAACAGTCTGATTGAGATGGCGGTGTCCATTTCAAAGTCGCCTATGTTGGCAGTGCCTGAATCTCTGGCTGTGCTTGGTGCCATTTTGGGGGCATCCCAGAAGAAGCTAGTGAAGAGGCTCGAGGATGAAGGAGCACCACCTAAAGTTAATGCCTGGATTGATTCAATGAGAGCTTCCTCTCCTACACGACTCAAATCCACCCTCCCTCCTTCTCAAAACCAACTCTTTCATTCTTGGACTCTTCGTCATCCTTCTGCGCTCAACATGTTTGATCAGATCATATGTAAATCTCAGGCAAAGCAAATTGTTATCTTTCTTGACTACGATGGAACTCTTTCCCCAATTGTTGCAGACCCAGATAAAGCATTCATGACTAAAaagATGAGATCAACAGTAAAGGACATAGCAAGGCATTTTCCCACAGCCATCGTGAGTGGGAGGTGCAGAGACAAGGTGTACAAGTTTGTAAGATTAGCAGAGCTGTACTACGCAGGCAGCCATGGGATGGACATCAAGGGACCAACAAAAAGTCAAAGTGCTAACAAGGGGAATCAAGCAGTCCCCTTCCAACCTGCGAGCGAGTTCTTACCCATGATCAATGAGGTTTACAAGATCTTACTAGAAAAAACAAAATCGGTGGCAGGGGCCAAAGTAGAGAACAACAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGACGAAAAGAGTTGGGGTGCATTGGCGGAGCAAGTTCGATTAGTGCTGAATGACTACCCAAAACTTAAACTCACCCAAGGCAGAAAAGTGCTGGAGATCCGCCCAAGCATTAAATGGGACAAGGGCAAGGCTCTCGAATTTTTGTTACACTCCCTAGGATTTGCCAATTCTAAGCATGTCTTTCCTATCTACATCGGTGATGACCGAACAGACGAGGATGCGTTTAAGGTTTTACGCACTAGAGGTCAAGGGATGGGGATTCTTGTATCTAAGGTTCCAAAAGAAACACAAGCTTCCTACACCTTACAAGACCCATCAGAGGCAAGTCCAGTTAATTAA 1080 0.4528 MTNQNLVVSDVESGINSLIEMAVSISKSPMLAVPESLAVLGAILGASQKKLVKRLEDEGAPPKVNAWIDSMRASSPTRLKSTLPPSQNQLFHSWTLRHPSALNMFDQIICKSQAKQIVIFLDYDGTLSPIVADPDKAFMTKKMRSTVKDIARHFPTAIVSGRCRDKVYKFVRLAELYYAGSHGMDIKGPTKSQSANKGNQAVPFQPASEFLPMINEVYKILLEKTKSVAGAKVENNKFCLSVHFRCVDEKSWGALAEQVRLVLNDYPKLKLTQGRKVLEIRPSIKWDKGKALEFLLHSLGFANSKHVFPIYIGDDRTDEDAFKVLRTRGQGMGILVSKVPKETQASYTLQDPSEASPVN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3013 359 Gene3D - 199 283 - -
Sto9g3013 359 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 355 - -
Sto9g3013 359 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 355 IPR044651 GO:0004805|GO:0005992
Sto9g3013 359 Pfam Trehalose-phosphatase 120 353 IPR003337 GO:0003824|GO:0005992
Sto9g3013 359 Gene3D - 119 349 IPR023214 -
Sto9g3013 359 SUPERFAMILY HAD-like 118 354 IPR036412 -
Sto9g3013 359 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 119 328 IPR006379 -
Sto9g3013 359 TIGRFAM T6PP: trehalose-phosphatase 114 354 IPR003337 GO:0003824|GO:0005992
Sto9g3013 359 CDD HAD_TPP 118 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3013 Sto-Chr9 31108839 31110598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3013 119 323 Trehalose Biosynthesis Gene Families AT1G70290 27.650 2.87e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3013 K01087 - gmx:100788641 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0485 5 3077723 3079463 Sto9g3013 9 31108839 31110598 CCT
Sto9g3013 9 31108839 31110598 Sto9g3013 9 31108839 31110598 ECH