Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3012 ATGGCAGCTACAATGGATTTGTACAATAGCACGGAGCATGAGTCAGATCAGTTGGGAGTCTCACCCAACGTCTTCCCTTACTCTGCTTCACTCCCTTCCTACACCAATGTGTACCCAGACGGTTTCTCACCCTCAATGAACCATGTATTTACTGAGGGCTTATCCAACAACCAAAACTTGATTGGTTTCGAGCAACCATGTTCTGGTATTGGCCTCAACCACACATCCCCTTTTCAGATTCACCAGATCCAACCTCAGATCCTTTCATGGAACCATGATAGTAACagtaatagtaatagtaatacCCTCAGCTTCCTCTCTCCCAAACCTGTTCCCATGAAGCAAATTGGCACCCCTCCCAAGCCCACCAAGCTCTACAGAGGAGTCAGGCAACGCCATTGGGGCAAATGGGTCGCTGAGATCCGACTCCCCAAGAACCGTACCCGACTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCTGCCCTCGCTTACGACAGGGCCGCTTACAAGCTCCGAGGTGACTCGGCTAGGCTCAACTTCCCCAACCTCCGACTCCAAGCTACCGAATTCGGGGACTACAGCCCTCTGCATTCGTCCGTGGATGCCAAGCTTAAAGCCATTTGTGACGGCTTGGCTGATTTGCAGAAGCAGGGCAAGTCCCAGAAACCCAAGAGGTCGAAGTTGGCTTCTGCCGAAGCTCAGCCGCAGACGGTGGCGGGTGATAAGTGTTGCAAGGTGGAGAGTTCATCGTCTCCGGTGATGACTGAGAGCGAGGAATCTACGGGTTCTCCTCCCTTGTCTGATCTTACTTTTGGCGATGTGAGCGAGTCACAGTGGGATGGTGTTGGCGACATTCTTAATTTGCACAAATACCCATCTTATGAGATCGATTGGGCGTCTCTGTGA 909 0.5138 MAATMDLYNSTEHESDQLGVSPNVFPYSASLPSYTNVYPDGFSPSMNHVFTEGLSNNQNLIGFEQPCSGIGLNHTSPFQIHQIQPQILSWNHDSNSNSNSNTLSFLSPKPVPMKQIGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYKLRGDSARLNFPNLRLQATEFGDYSPLHSSVDAKLKAICDGLADLQKQGKSQKPKRSKLASAEAQPQTVAGDKCCKVESSSSPVMTESEESTGSPPLSDLTFGDVSESQWDGVGDILNLHKYPSYEIDWASL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3012 302 MobiDBLite consensus disorder prediction 218 274 - -
Sto9g3012 302 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Sto9g3012 302 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Sto9g3012 302 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Sto9g3012 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 15 301 - -
Sto9g3012 302 MobiDBLite consensus disorder prediction 249 274 - -
Sto9g3012 302 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Sto9g3012 302 CDD AP2 124 184 IPR001471 GO:0003700|GO:0006355
Sto9g3012 302 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Sto9g3012 302 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Sto9g3012 302 Gene3D AP2/ERF domain 125 183 IPR036955 GO:0003700|GO:0006355
Sto9g3012 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3012 Sto-Chr9 31097188 31098240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3012 24 302 AP2-EREBP Transcription Factor Family AT1G78080 53.691 4.52e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g3012 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3012 K09286 - gmx:100800478 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0481 5 3054767 3059289 Sto9g3012 9 31097188 31098240 CCT
Sto9g3012 9 31097188 31098240 Sto9g3012 9 31097188 31098240 ECH