Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2983 ATGAGTTCTACATCAACTCAAGTTGTCATCTCAAAAAGGATGGGCATATATGAGCCATTCCAGCAAGTTAGCATGTGGGGGGACAActtcaaagttgaaaatagTCTAAATTCAGGTCCTTCCTCAATATTCATGGTGAACCCTAGCACAGAGAACAAGTCTGAATACATTCCTCATGAATCAAGTGGTCCTTCTGGAGATGATCAAGAGACCAATAAAGATGTTAGTAAGGTGCTCAGACGCTTGGCTCAAAATCGTGAAGCTGCTCGGAAAAGCCGGCTGCGGAAAAAGgCTTATGTCCAACAACTAGAAACAAGCCGTTTGAAGCTCATGCAATTGGAGCTAGAGATTGAGAAAGCAAAGAAACAGGGTATGTTTATGAGCAGTGCATTAGATGCTAGTTATATAGGATCATCTGGAACGGTCAACCCAGGGATAGCGAGTTTTGAGATGGAATATGGACTCTGGGTTGAACAACAACATAGACAGAATGCAGAACTAAGAAATGCAATGCAAAGTCAAGTATCAGATGTGCAGCTGCATTTACTTGTTGAGAGTGGCTTGAACCATTACTCAAATCTTTTCAGGATGAAAGCAGATGCCGCAAAGGCTGATGTCTTTTATTTAATCTCTGGAGTTTGGAAAGCTTCAGTAGAACGCCTTCATCTTTGGATTGGAGGATCCCGCCCATCACAGCTTCTTAATATCATCGTGCCACAACTGGATCCCTTATCCGATCAACAGTTAGCGAGTTTCAACAAGCTTCGGCTGTCTTCTCAGCAAGCAGAAGATGCTCTTTCGCAAGGATTGGAGAAGCTTCAGCAGAGTCTGGTGCTCAACATAGCAGCCGATCCATTGGACATAGGGAACTTCGGCTTTCACATGGCGGCTGCGATGGAGAAAATTGAAGCCCTAGAAGGTTTTGTAAACCAGGCAGATCATCTTCGGCAACAAACGTTGCAGCATATGTCTCGGATCCTGACGACGCAGCAAGCGGCGCAAGGATTGCTGGCAATGGGGGAATACTTTCATCGTCTTCGTGCTCTTAGTTCTCTTTGGGCTGCTCGTCCATCATCTGACCCTGCATTCCAAACCTAA 1098 0.4435 MSSTSTQVVISKRMGIYEPFQQVSMWGDNFKVENSLNSGPSSIFMVNPSTENKSEYIPHESSGPSGDDQETNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIEKAKKQGMFMSSALDASYIGSSGTVNPGIASFEMEYGLWVEQQHRQNAELRNAMQSQVSDVQLHLLVESGLNHYSNLFRMKADAAKADVFYLISGVWKASVERLHLWIGGSRPSQLLNIIVPQLDPLSDQQLASFNKLRLSSQQAEDALSQGLEKLQQSLVLNIAADPLDIGNFGFHMAAAMEKIEALEGFVNQADHLRQQTLQHMSRILTTQQAAQGLLAMGEYFHRLRALSSLWAARPSSDPAFQT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2983 365 Pfam bZIP transcription factor 77 107 IPR004827 GO:0003700|GO:0006355
Sto9g2983 365 PANTHER TRANSCRIPTION FACTOR TGA9 14 359 - -
Sto9g2983 365 SUPERFAMILY Leucine zipper domain 77 110 IPR046347 GO:0003700|GO:0006355
Sto9g2983 365 Coils Coil 96 123 - -
Sto9g2983 365 PANTHER FACTOR TGA7, PUTATIVE-RELATED 14 359 - -
Sto9g2983 365 MobiDBLite consensus disorder prediction 53 73 - -
Sto9g2983 365 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
Sto9g2983 365 SMART brlzneu 73 133 IPR004827 GO:0003700|GO:0006355
Sto9g2983 365 Pfam Seed dormancy control 165 238 IPR025422 GO:0006351|GO:0043565
Sto9g2983 365 ProSiteProfiles DOG1 domain profile. 146 356 IPR025422 GO:0006351|GO:0043565
Sto9g2983 365 Gene3D - 76 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2983 Sto-Chr9 30855836 30857879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2983 2 357 Calmodulin-binding Proteins AT1G77920 57.951 2.56e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto9g2983 DOG1 7.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2983 K14431 - gmx:100526976 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0456 5 2851251 2853215 Sto9g2983 9 30855836 30857879 CCT
Sto9g2983 9 30855836 30857879 Sto9g2983 9 30855836 30857879 ECH