Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2976 ATGCGTCCATCCAAGTCACGGCAAGTTCCTCCGGCGCCGGCGCAGAATTGCCCTTTGGAACCTAAAATATGGCGAGCATGCGCCGGTACATCCGTGCAAATTCCTGCTCTGCATTCTAGGGTTTATTACTTTCCTCAGGGCCATCTCGAGCATGCCTCCTCGCCTCCTCGATACCTCAATCCTGTCATGTATTACAAGCCTCTCATTCCGTGTCGCATCTCCGGCGTTGAGTTCCTTGCTGATTCCGTCAGCGATGAGGTATTTGCTAAGATTCGGCTCCATCCTTTGACTGATCACGACTTTCCTCACGTCGTCAATTCTGCGGAAGAGCCGGACGATGACAAGATCGTGTCGTTTGCCAAGATTTTGACGCCTTCTGACGCCAACAATGGCGGTGGATTCTCTGTGCCTAGGTACTGTGCTGACTCCATCTTCCCGCCGTTGGACTTCCAGGCCGACCCACCCACCCAGACATTGTTCGTGACTGATGTTCACGGCAACGTCTGGGACTTTCGCCACATTTATCGGGGCACGCCGAGGCGGCACCTGCTCACTACTGGCTGGAGTAAGTTTGTCAATCACAAGAAGTTGGTTGCTGGTGATTCCGTGGTTTTCATGAAGAATTCCAGGGGGCAGATGTTCGTTGGGATTCGCAGAGCTGCGCGATTTGCTGCAGGAAGTGGTGGCGATTGCACCATGTGGTGCCCCCAGATCGGTGGAGTGAGGACTAAGCCTGACGGGGAGGAGCAAGAAGAGCGCTCTTCAGGTTCCAGAGGAAGAGAGGGGTTTTCCAGGGACGGGAGGGGAAAATTGTCGCCCAAGGAAGTTGCAGATGCTGCAGAATTGGCAGCACAAAATATGCCGTTTGAGGTCGTGTATTATCCAAGAATGGGGTGGTCGGACTTTGTGGTGAAAGCGGAAGTTGTCGAGAAATCTTGGAATGTCAGGTGGACTTCCGGAATGAGAGTAAAAATGGCTATGGAGACAGAGGATTCGTCGAGGGTGACTTGGTTTCAGGGGACAGTCTCTTCTGCATCTGCTCCTGATAATGGGCTTTGGTGGGGTTCTCCTTGGCGTATGCTTCAGGTTATGTGGGATGAACCTGAAGTCTTGCAAAATGCAAAGCGAGTCAGCCCCTGGGAGGTTGAACTTGTTTCCCCTACACCTCCCCTCCACACTGCATTCCCTCCTGCAAAAAGGTTTAGAGCTGCTCAGTTTTCTGGAGTGCCTATTGATAGAGAGGGAGATCCCTTTTCGGTGACAGGACTCACTAATTCAACAATGGGGTCGAATCAATTGTTGAGTTACAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTGTCAAGTTCTTCTAACTTTGGAGATGATAATTCTCATCGGAATAATCGTAATTACTTTGCTAACATGTCGGAGCCAAAGATGATAACTGCGTCAACGGAGTTAAACATTGACAGTTCTCAATCTGAAAACTTGTCCCTAGATAGCCAGAGTAGTTTGCATTTGTTTGGCACAGATTTAGTTGCAACACAGAGCTGCAACTCAACAAAACTCGGTGGTGATACAATTATGCTATTTGGTAAAGTCATTCAATTAGAACAACCTGTTGAAAGTGGTTCCAATGCTGCTGGTTGCACAGGAGATGAGGGCAGTGATGGCTGCAATGAGACTGAAGGAATGGACAACCCAGTTATTCATTCAGGCTGGAAGGCACCAGGCAGGCAGCAAGCTGACTTAAACCTTCGCTTTCGATATCTATGTCGTTATTTGTGTTCTTGGACTTTTCAAACTAAGTGTGGGCTAGATATTCAATccagGATGCCGTTAAACATGAATCCTTTGAGGTATGGACAATTCCACGTGGGAGAAGATTCGGATTTCCAATTTGTAATAGAGAGGCACTTGCAAATTTGTTCTGAGTTTGGATTGATGGAGTTTTATGTAGAGATATCAACACATGATatcaatatagatatagaaaaccAATTATCTTCTGACTACAATACTCAGCCAACACCTCAGACGGATCAAACTTTAATTGCTAGTTCCTCGCGTTTACAAATTGTTGGTACATGTCAACCTCCTACAGAAGACCTTGGCGAATTTTCAGACGAAGATGAATATGAGGCAAGTGTTCCTATTCGGATGTCTCATCAAGACAAAGAAGATGATAATGTTTGGGAAGATGTTGTTGAAGAAGAATTAGCTAATTTTTACTCTCAAGTGGATGTGGAGAGAGCAAGGGGCTTTATTGGAGACTTTGGTCCACGCAGTGATGATGTTGGGGAGTTGTATGAAGGGATGAAGTTTCCAACGAAGGCCGAACTACGTAGGCATGTGAAGCTTTATCATATTAAGAATAACTGCACATTTGTAGTTGCTAAGTCAGGGAGTAATTTTGAGGACTAG 2424 0.4649 MRPSKSRQVPPAPAQNCPLEPKIWRACAGTSVQIPALHSRVYYFPQGHLEHASSPPRYLNPVMYYKPLIPCRISGVEFLADSVSDEVFAKIRLHPLTDHDFPHVVNSAEEPDDDKIVSFAKILTPSDANNGGGFSVPRYCADSIFPPLDFQADPPTQTLFVTDVHGNVWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKNSRGQMFVGIRRAARFAAGSGGDCTMWCPQIGGVRTKPDGEEQEERSSGSRGREGFSRDGRGKLSPKEVADAAELAAQNMPFEVVYYPRMGWSDFVVKAEVVEKSWNVRWTSGMRVKMAMETEDSSRVTWFQGTVSSASAPDNGLWWGSPWRMLQVMWDEPEVLQNAKRVSPWEVELVSPTPPLHTAFPPAKRFRAAQFSGVPIDREGDPFSVTGLTNSTMGSNQLLSYNTFPAGMQGARHDLFSVSSSSNFGDDNSHRNNRNYFANMSEPKMITASTELNIDSSQSENLSLDSQSSLHLFGTDLVATQSCNSTKLGGDTIMLFGKVIQLEQPVESGSNAAGCTGDEGSDGCNETEGMDNPVIHSGWKAPGRQQADLNLRFRYLCRYLCSWTFQTKCGLDIQSRMPLNMNPLRYGQFHVGEDSDFQFVIERHLQICSEFGLMEFYVEISTHDINIDIENQLSSDYNTQPTPQTDQTLIASSSRLQIVGTCQPPTEDLGEFSDEDEYEASVPIRMSHQDKEDDNVWEDVVEEELANFYSQVDVERARGFIGDFGPRSDDVGELYEGMKFPTKAELRRHVKLYHIKNNCTFVVAKSGSNFED 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2976 807 Gene3D - 316 388 - -
Sto9g2976 807 SUPERFAMILY DNA-binding pseudobarrel domain 104 226 IPR015300 -
Sto9g2976 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 564 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto9g2976 807 Gene3D - 116 221 IPR015300 -
Sto9g2976 807 MobiDBLite consensus disorder prediction 244 274 - -
Sto9g2976 807 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Sto9g2976 807 PANTHER AUXIN RESPONSE FACTOR 13 564 - -
Sto9g2976 807 CDD B3_DNA 118 219 IPR003340 GO:0003677
Sto9g2976 807 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Sto9g2976 807 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto9g2976 807 SMART B3_2 119 221 IPR003340 GO:0003677
Sto9g2976 807 MobiDBLite consensus disorder prediction 239 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2976 Sto-Chr9 30815657 30823615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2976 19 563 B3 DNA Binding Superfamily AT1G77850 48.841 3.38e-168 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto9g2976 B3 2.5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2976 - - qsu:112025063 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0451 5 2814598 2818917 Sto9g2976 9 30815657 30823615 CCT
Sto9g2976 9 30815657 30823615 Sto9g2976 9 30815657 30823615 ECH