Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2957 ATGGCACAGACGCTAGCAATTCCTGTGgcaccttctctctctcttatctgCAATTCCCAATCTAGTCCCCTTTCTAGAACCGTCTCTTTCACTTTCTCCAACGTTCCCAAGATGCAGGTTCAAGGTCTGAGCATCCGATGTGCTCGTGTTGGGGGTGTAGAGATTCCAAACAACAAGCGAATTGAGTGCTCACTTCAGTATATACATGGAGTTGGGCGCAGTAGAGCAAGACAAATCCTATGTGACATCAACATGGACAACAAGATCACAAAGGACTTGAGTGAGGAGGAACTCATCACTCTCAGGGATGAAGTCTCCAAGTACATGATTGAAGGAGACTTGAGACGGTTTAATGCACTGAATATAAGGAGATTGAAGGAGATCCAATGCTACAGAGGCATCAGACATATTCAGGGGCTTCCCTGTAGAGGACAACGCACCAAGAACAATTGCCGGACCTTGAAGGGTAAGAAGGTGGCCATTgctggaaagaaaaagaagtaa 504 0.4246 MAQTLAIPVAPSLSLICNSQSSPLSRTVSFTFSNVPKMQVQGLSIRCARVGGVEIPNNKRIECSLQYIHGVGRSRARQILCDINMDNKITKDLSEEELITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2957 167 Pfam Ribosomal protein S13/S18 49 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto9g2957 167 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 166 - -
Sto9g2957 167 Gene3D - 48 116 - -
Sto9g2957 167 ProSiteProfiles Ribosomal protein S13 family profile. 50 156 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto9g2957 167 SUPERFAMILY S13-like H2TH domain 48 159 IPR010979 GO:0003676
Sto9g2957 167 ProSitePatterns Ribosomal protein S13 signature. 132 145 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto9g2957 167 TIGRFAM uS13_bact: ribosomal protein uS13 49 158 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto9g2957 167 Gene3D 30s ribosomal protein s13, domain 2 117 167 IPR027437 -
Sto9g2957 167 Hamap 30S ribosomal protein S13 [rpsM]. 47 163 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Sto9g2957 167 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 166 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2957 Sto-Chr9 30714263 30715623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2957 49 165 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.469 7.38e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2957 K02952 - tcc:18592264 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2957 9 30714263 30715623 Sto9g2957 9 30714263 30715623 ECH