Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2894 ATGGCAGAAGAGATCTCTCCCATGGTCATTGACGACGATGATAACAACGACTCTGCCAGACCTGAGAAGGGCAAAAGCGTTGTCGTTGCCGGCTATCCTTCCGACGGCAAGGACACTCCGTGGGTTGAAAAATATCGCCCTAAGTCCCTCGACGACGTCGCCGCTCATCGTGACATTGTCGACACCATTGATAAGCTGACATCTGAGAACAGATTGCCCCATCTCCTTTTGTACGGTCCTCCTGGCACTGGTAAAACATCAACTATTCTGGCCGTGGCGCGCAAACTATATGGAGCACAATACCACAATATGATTTTGGAGCTCAATGCATCGGATGATAGGGGAATTGATGTTGTACGCCAACAGATACAAGATTTTGCTAGCACTCAGAGCTTCTCATTTGGAGTCAAGTCCTCTGTAAAGCTGGTCTTGTTAGATGAGGCAGATGCAATGACAAAGGATGCACAATTTGCATTACGTAGAGTTATTGAGAAATATACAAAAAATACTAGGTTTGCACTTATATGTAATCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCTCTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTACAGACAATGGCTTAGAAGCACTTATTCGGCTTAGCAATGGTGACATGAGAAAGACATTGAACATTCTGCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTATCTATGTACTGGAAACCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTGAATGAACAGTTTGCAGATAGTTTTAAAAGAATATATGAAATCAAGACACAGAAAGGGTTGGCTCTGGTAGATATTGTGAGAGAGGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGGTGTTCGAGTACAGTTGATGAATGATTTGGCTGATATAGAGTACAGATTGAGTTTTGGTTGCAATGATAAGCTCCAACTGGGATCGGTTATTGCTTCTTTCACACGAGCTAGAACTGCACTCGTTGAGGCTGCTAGTTAG 1089 0.4307 MAEEISPMVIDDDDNNDSARPEKGKSVVVAGYPSDGKDTPWVEKYRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVSERLKHVIKAEGLDVTDNGLEALIRLSNGDMRKTLNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTQKGLALVDIVREVTMFVFKIKMPPGVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARTALVEAAS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2894 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 256 IPR027417 -
Sto9g2894 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 353 IPR008921 GO:0003677|GO:0006260
Sto9g2894 362 Pfam ATPase family associated with various cellular activities (AAA) 75 195 IPR003959 GO:0005524|GO:0016887
Sto9g2894 362 Gene3D - 263 360 - -
Sto9g2894 362 PANTHER REPLICATION FACTOR C SUBUNIT 5 35 358 - -
Sto9g2894 362 Gene3D - 201 262 - -
Sto9g2894 362 CDD AAA 59 197 - -
Sto9g2894 362 CDD HLD_clamp_RFC 198 260 - -
Sto9g2894 362 MobiDBLite consensus disorder prediction 1 32 - -
Sto9g2894 362 SMART AAA_5 71 201 IPR003593 -
Sto9g2894 362 Pfam Replication factor C C-terminal domain 263 349 IPR013748 -
Sto9g2894 362 Gene3D - 34 197 IPR027417 -
Sto9g2894 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2894 Sto-Chr9 30262085 30266587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2894 1 361 Core DNA Replication Machinery Family AT1G77470 77.236 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2894 K10756 - gmx:100805231 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2894 9 30262085 30266587 Sto9g2894 9 30262085 30266587 ECH