Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2891 atgGAACCAGAAGATGGAAAACAAACTTCCCACAAGACCCCATACACTGAACTCGAGCAAGTTAACTCTGATCTCATTCTGGCAATTAATTTGCAAGAACAAGAGAGAACCTTCACAATGCTCTCTACAATTGATAGCGAGGAAAGCAGCGACGATGATGAAAGTGAGTCCTCTTTTGATGAAGATGCTGATTTCTCAGAGAGCCAAGAGTTTGAATTAGAAGACCTTCAGTTTCTTGAGGGTGAAGGAAGCAATTATGAAGAAATGGAAGAAGATGAGATTGATCCGGATGATTTATCTTATGAAGAGCTGATTGAATTGGGAGAGTTTATAGGAGAAGAGAAAAGAGGACTATCAGCCAATGAAATCCCATCCTGCTTGTATCCTCACACTTGCCATTTTGGAGAAAACAAAACAGGAATAGATCGATGTGTGATTTGCCAGATTGAATATGAAGAAGGTGAAGCACTTGCAGCACTTCAATGTGATCACCCTTATCACATCGATTGCATAAGCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTAGCACTGAAGTAATATCAACTCCAAAGCTACCCAACAATCCTTGA 597 0.3987 MEPEDGKQTSHKTPYTELEQVNSDLILAINLQEQERTFTMLSTIDSEESSDDDESESSFDEDADFSESQEFELEDLQFLEGEGSNYEEMEEDEIDPDDLSYEELIELGEFIGEEKRGLSANEIPSCLYPHTCHFGENKTGIDRCVICQIEYEEGEALAALQCDHPYHIDCISKWLQIKKVCPICSTEVISTPKLPNNP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2891 198 SMART ring_2 144 184 IPR001841 -
Sto9g2891 198 Pfam Ring finger domain 143 184 IPR001841 -
Sto9g2891 198 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Sto9g2891 198 SUPERFAMILY RING/U-box 143 191 - -
Sto9g2891 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 192 IPR045191 GO:0061630
Sto9g2891 198 MobiDBLite consensus disorder prediction 39 71 - -
Sto9g2891 198 MobiDBLite consensus disorder prediction 46 71 - -
Sto9g2891 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 196 IPR013083 -
Sto9g2891 198 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2891 Sto-Chr9 30239102 30239698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2891 91 194 C3H Transcription Factor Family AT3G63530 49.533 1.22e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2891 K19045 - gmx:100526881 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2891 9 30239102 30239698 Sto9g2891 9 30239102 30239698 ECH