Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2883 ATGCAACTTCATCCTCTGGCTGTTTCATGCTTTTGTGAAGACTTATCTGAAACGAAAAACCTAACAAATCTGAAAACCGCTTCCAAATCTGGTTTCTCCATCACAACGCAGGACAGAATGTTCAGCCGACATCGGCATGGATCATCCCCTTCCTCGTCCCAAGAGAAGAGGACGTCAGTTTCAGAGAATTTTAGCAAGAAGGTTACGGCGGTAAAAAACCATTTGACAAAGAAGACTTCTGCTCTCGCCGACGTAACCAATCAAAGAAATATCTCTCTCAATGGTATAAGGACCTCGAATTCTGCTCCGTCCAAGCCTATGGTTCCATGTGTATCTAAAATTGCCAAGACAAAGAAGGAATCTATTACCAGTCCTCAGAAAAAGAATACATCTAGGGAATCTTCACAGGCCTCCGTGAAATCAAGTGTTTTGTTACTTCCAAAAGACACATCCTCAACCAGAAGTAGTCAATTAAAGGCCGGAGTTGAAGTCTTCCTTGATTCAAGCACTATTCGTTCTATTTGTCCTGCTTTTACAAGTATAGTCTATGCCTCCAGGATGACGGACATTTCACCAAGTAAATCCTTTAATGAATCAGTTTCATTGGATGAAAGCATGTCAGTCTGTGATTCTTTGAACAGTCCAGAATTTGAATATATTGACCATGAGGATACCATATCACTTAAATCAATTGAGTCAAAGACAGAGAGAACTTGTGATAGTAAAGTTGTCGATATTgacaaaaatttcaaggatcCACAAGTTTGTCCATCCATTGCACATGAGATCTACCAATATTTGCGTGTATCTGAGGGGTATAAAAGGCCATCTATGGACTTCATGGAGAAGATACAGAAAGATGTCAATTCTAGCATGCGGGCAATACTCATTGATTGGCTTGTGGAGGTTGCTGAAGAATACCGGTTTCTACCTGATACGCTATTTTTGACAGTGAATTACCTAGATCGGTATCTTTCTGGcaacaaaataaataggaagcaTTTGCAACTGCTTGGTGTTGCCTGCATGATGATTGCTGCAAAATATGAGGAGATCTGCCCCCCCAAGGTGGAAGAGTTCTGTTATGTAACTGATAATACATATTCTAGAAATCAGGTTTTGCAAATGGAATCTGATGTGCTCAGATTCTTGAAGTTTGAAATGACAGTTCCAACAGCTAGATGTTTTTTGAGGCGCTTCATTATTGCTGCCCGACAAACCTGTAAGGTTCCAAAGATGCAGTTAGAGTATTTGGCAGATTATCTTGCTGAGTTATCTCTTCTAGAGTATAGTATGCTTCAGTACACCCCATCATTAATTGCTGCATCAGCCACTTTCTTGGCTCAATTCATACTACTACCTCGGAAGAAACCTTGGAATTCAACACTAAGGCATTACACAAGTTACCAATCATGGGACCTGTGTGATTGTGTCAACGCATTGCATTGGTTGTGCTGTCATGGCAGTTATAATTTACCTGCCATTAGGGAGAAATACAGTCAACATAAGATGTATACTCTGACAAAGTTTGCTTATATCGTTCCCCATAACTATGTGGCTGATGACTTGTGCTCATAA 1578 0.3948 MQLHPLAVSCFCEDLSETKNLTNLKTASKSGFSITTQDRMFSRHRHGSSPSSSQEKRTSVSENFSKKVTAVKNHLTKKTSALADVTNQRNISLNGIRTSNSAPSKPMVPCVSKIAKTKKESITSPQKKNTSRESSQASVKSSVLLLPKDTSSTRSSQLKAGVEVFLDSSTIRSICPAFTSIVYASRMTDISPSKSFNESVSLDESMSVCDSLNSPEFEYIDHEDTISLKSIESKTERTCDSKVVDIDKNFKDPQVCPSIAHEIYQYLRVSEGYKRPSMDFMEKIQKDVNSSMRAILIDWLVEVAEEYRFLPDTLFLTVNYLDRYLSGNKINRKHLQLLGVACMMIAAKYEEICPPKVEEFCYVTDNTYSRNQVLQMESDVLRFLKFEMTVPTARCFLRRFIIAARQTCKVPKMQLEYLADYLAELSLLEYSMLQYTPSLIAASATFLAQFILLPRKKPWNSTLRHYTSYQSWDLCDCVNALHWLCCHGSYNLPAIREKYSQHKMYTLTKFAYIVPHNYVADDLCS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2883 525 CDD CYCLIN 292 381 IPR013763 -
Sto9g2883 525 ProSitePatterns Cyclins signature. 293 324 IPR006671 -
Sto9g2883 525 Gene3D - 276 389 - -
Sto9g2883 525 SMART Cyclin_C_2 391 510 IPR004367 -
Sto9g2883 525 Gene3D - 262 506 - -
Sto9g2883 525 SUPERFAMILY Cyclin-like 251 388 IPR036915 -
Sto9g2883 525 SMART cyclin_7 395 483 IPR013763 -
Sto9g2883 525 SMART cyclin_7 298 382 IPR013763 -
Sto9g2883 525 PIRSF Cyclin_A_B_D_E 35 517 IPR039361 -
Sto9g2883 525 Pfam Cyclin, N-terminal domain 262 388 IPR006671 -
Sto9g2883 525 MobiDBLite consensus disorder prediction 35 63 - -
Sto9g2883 525 CDD CYCLIN 389 482 IPR013763 -
Sto9g2883 525 Pfam Cyclin, C-terminal domain 391 506 IPR004367 -
Sto9g2883 525 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 66 236 - -
Sto9g2883 525 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 240 505 - -
Sto9g2883 525 PANTHER CYCLINS 66 236 IPR039361 -
Sto9g2883 525 PANTHER CYCLINS 240 505 IPR039361 -
Sto9g2883 525 SUPERFAMILY Cyclin-like 390 508 IPR036915 -
Sto9g2883 525 MobiDBLite consensus disorder prediction 115 142 - -
Sto9g2883 525 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2883 Sto-Chr9 30200653 30204157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2883 152 518 Core Cell Cycle Gene Families AT1G44110 52.778 4.59e-139 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2883 K06627 - qsu:112028128 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2883 9 30200653 30204157 Sto9g2883 9 30200653 30204157 ECH