LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g2880	ATGAGTTTTCTGAAGCCCTCCGTACTGTACCCTTCCCTCCGATGGATGCCCTGTCAGAGTTGGGGTTTTCTCCGATGGCCCGGTCTTGATGGCTGCTTGAGGCTCTTGGTGCTTTTTCTTCTCTGGTCCGTCTTCTCTGAGCTTCGCTACATACCCTCTTCTTCTATGTACCCTACACTTGCTGTTGGGGATCGAGTTATTCTCGAAAagGCTACATATTACATCAGGAGCCCTGCTATAAATGACATTGTAACATTCCAGGATCCAACAGAGCTATCACGAGACAAGACAGCAAATGTATTTATCAAAAGAATTGTTGCGAAAGAAGGAGACTTCGTCGAGGTTCGTCATGGGTTTCTCTACGTCAATGGTGTTGCTCAAAGGGAAAATTATATAGCAGAAAGGCCAACATACACAACAAACTTAACGTATGTACCAAAAGGCCATGTTTATGTGTTAGGGGATAATCGTAACATCAGCTATGATTCCCATGTCTGGGGAGCACTTCCTGTCAAAAACATAATTGGAAGATATGTCATGCGTTGTCACAGACCCACAAACATTTGA	567	0.4409	MSFLKPSVLYPSLRWMPCQSWGFLRWPGLDGCLRLLVLFLLWSVFSELRYIPSSSMYPTLAVGDRVILEKATYYIRSPAINDIVTFQDPTELSRDKTANVFIKRIVAKEGDFVEVRHGFLYVNGVAQRENYIAERPTYTTNLTYVPKGHVYVLGDNRNISYDSHVWGALPVKNIIGRYVMRCHRPTNI	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g2880	188	CDD	S26_SPase_I	47	177	IPR019533	GO:0004252\|GO:0006465
	Sto9g2880	188	Pfam	Signal peptidase, peptidase S26	35	181	IPR019533	GO:0004252\|GO:0006465
	Sto9g2880	188	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	8	187	-	-
	Sto9g2880	188	ProSitePatterns	Signal peptidases I serine active site.	53	60	IPR019756	GO:0004252\|GO:0016021
	Sto9g2880	188	ProSitePatterns	Signal peptidases I signature 3.	150	163	IPR019758	GO:0004252\|GO:0016021
	Sto9g2880	188	Gene3D	Umud Fragment, subunit A	53	184	-	-
	Sto9g2880	188	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	44	60	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto9g2880	188	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	101	113	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto9g2880	188	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	145	164	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto9g2880	188	TIGRFAM	sigpep_I_bact: signal peptidase I	35	182	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Sto9g2880	188	SUPERFAMILY	LexA/Signal peptidase	45	182	IPR036286	-
	Sto9g2880	188	PANTHER	SIGNAL PEPTIDASE I	8	187	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g2880	Sto-Chr9	30187255	30190174	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g2880	56	181	MADS-box Gene Family	AT1G29960	29.921	5.50e-08	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto9g2880	K03100		-	gmx:100306121	278.87

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto9g2880	9	30187255	30190174	Sto9g2880	9	30187255	30190174	ECH