Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2869 ATGCTGAGGACAAATACATTCAAGGGTGCGAATGTGTTCATGTCACGCAACCTGGTGCCGCCGGAAGTGTTCGATGCACTTCACGACGCGCTTAAGAATAATGGCGCACATGTCGAGCTTTGCTGCGACCCTTCGCGCAATGGGCCCAACGATTACCACATAATATCCCATGATCACgAGAAGCTTGAGGATCTTAAAGCCAAGGGCTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAAAGACTTCTGCCCAAACAGGGTTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTGCTTGCATCTGGCTTTGATATGGATGAGAAGGTTAAGATAGGAGAGTTAGTAACTTCGATGGGAGGAGTTCTTCATACTAAAGCATCACTGGATGTCAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTTTGCGTTACCTGGCATGTTACTGGCTCGTACTAGTGATCTTGTACTTTTTCAAGATTCTTTCCATTTCTGCATGTTGAACTGTTGGTGGGCTTTGAATATAGTGAAGAAACCAATAGTCACTTTTAATTGGTTAAAGCAATGCACTATAGAGCATCGTGTTGTCCCTCAAGAGTCATACAGAGTTCTTCCTTTCTCGGGGTTGACAATTTCTGTTACCAGAATTCCAGCAGTCACAAGTATTATATTGCCTCAGGCATCGTGTGTTGCTTCTCCTGAAGGTGACAAATATAAGGTGGCAAAGCGATGGGGTCACATTTATATTGTGACAAAGAAATGGTTTGATCAATCTATTGCCAGAAGAGCATGTCTCAACGAGGAGTCCTACCCTGTTCAGAATGGATCTGTATCTTCACATAAAACATCTACAGATTACTTAGCAGTGCAACATAGCCAAGAAAAGGAAATGGGGAAATTGCAACCTGCAGCATCATGTGGGGCTCCTGATTCATATATGCCTGTTGTTTCTGGTGCTGAGTTTGAGGATAGAAATCCAGAAGCTACCCAGTCAGAAATCATCTCTTCTGGTGTTTCATATGCTCCTATTTCTGTTAAAGAGACAGATCCTGAACCACCTCCAGTGCAGCCCTGTGATGAACCAAACCTTGATGGTGCTGTAGCCAATGATTCTGAATCTGATGATAACGACCTGTACTTATCAGAGTGCAGAATATTACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAACTAGTTAATATGGTCCGTAAAGGAGGAGGATCCCGATATATGTCTCTAAATGATAAGTTGACACACATAGTAATTGGAACACCTTCAGAAACGGAAAAGAAGGAGGTAAGGAGTCTTGCTGCTTTTGGTGTCATCCATGTTGTTAAAACCACTTGGCTTGAAGAATGTGACcgagaaaagaaagaagtccTTGTTCTTAGGAGACACATTGCGCAAGATCTTCTTCTTCCAAAAGGTTCAACATACTTTTCAAAAGGAGCAGTAACTGGCATCATGGGAAAGAATCAAGTTGTGATACCATTGTCTTCGGAGaacaagaaaggaaagaagctgGAGACTGGTGTAAATGATCAAACATTTCTTAAATCAATGGGCAGATCTATACAGCAATCTCAACTTCCTGTtgttaataataaaatgaaaggtcAACAGAAGATGCAGCAAGACTCCATTTCTCAGTGCCTGAAGTCATCAACTATTTTCAGAGGGCtgatattttgtttttcaaattcttttccTGAAGAGAGAAGAGATGAGATCGTTCAATGGATAAATCAAGGGGGAGGAGAGGTAGTAAATGGGCACAAAAATCAGAATGCCCACTATACTATTGAGTGTCACGGTGTAACACCAGTGTTGGAAGATATGTCCCAAACTAAAAAAGTTTCCAGTCACTGGATACGATCTTGTTTAGAGGATGACTCCTTGCTGGATGTTGGCTGTCACATTCTTTATTCTCCTCTTCCCTGCCATATACCCTTGCCTGGATTTGAAAGCTTTCGGTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTACTTAGGAACTTGTGTTTTGTTCTTGGAGCTAAATTTGTGGAGAAGTTGACAAAGAAAGTCACCCATTTATTGTGTAAATTCGTCAATGGACCCAAATATGAGGCTGCTTGTAAGTGGGGGATCCAATCGGTTACATCTGAATGGATATTTGAATGTGTCAAACAGAATAAAATTGTTGCTGTTGATGAATTTTTACCAAAAGAAGTCACTGCTCAAGATCAAGAGGCGGGAATTTTTACTGTGAGCCAATTTCCTACCCAGGCTGCTCAAATTCTAAGTGGAGAGAACTCCTCCCAGTTTTCAAGTCGATCACAAAATTTGAGAAACACGCCAAAACATATATGTAGCCGAGTTGACAATCATGAGGTTGATGCTAAAATATCAAGTATTTACAGCAAAAAGGCGAGGCTTTTGGAAGAACCTGACCTATATGATATGGTGCCTTCTGCTGTTGATTCAGTTACCCATATCTATGATCCTATTTCTGCTGGAGACAATATGCTGAAAGATAATAATGAGGTTCCTCAAGCTGTTCCGGATGTTGCTGCTGCAATTGAGGATTTATTAGAGCAGACTAGTAAGGTAATAAGTGCTGATATTTTTTCATTGAAGTCCCCAGGGAAGACGGAGACTGAACAAAGTGTATCCTTAAaAATAGATTTTCTCATCCGATTgagTAGCAGAAATGAGAATAATGATGATGCTTCTCCAAGAGCAGGCATTTATGATAATTTTAGTGAAACACAAACAGAATCTCAGGTGGTTGGTTATGAAGAAGATTTGTCGGGAAGGCAAATGCTTATTGACAGAGTCCGAACTCGAAGTAGCATGGCTTGA 2877 0.3983 MLRTNTFKGANVFMSRNLVPPEVFDALHDALKNNGAHVELCCDPSRNGPNDYHIISHDHEKLEDLKAKGCNLLGPQCVLSCAKEQRLLPKQGFTCCLAMDGVKVLASGFDMDEKVKIGELVTSMGGVLHTKASLDVNFVIVKNVLAAKYKFALPGMLLARTSDLVLFQDSFHFCMLNCWWALNIVKKPIVTFNWLKQCTIEHRVVPQESYRVLPFSGLTISVTRIPAVTSIILPQASCVASPEGDKYKVAKRWGHIYIVTKKWFDQSIARRACLNEESYPVQNGSVSSHKTSTDYLAVQHSQEKEMGKLQPAASCGAPDSYMPVVSGAEFEDRNPEATQSEIISSGVSYAPISVKETDPEPPPVQPCDEPNLDGAVANDSESDDNDLYLSECRILLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIVIGTPSETEKKEVRSLAAFGVIHVVKTTWLEECDREKKEVLVLRRHIAQDLLLPKGSTYFSKGAVTGIMGKNQVVIPLSSENKKGKKLETGVNDQTFLKSMGRSIQQSQLPVVNNKMKGQQKMQQDSISQCLKSSTIFRGLIFCFSNSFPEERRDEIVQWINQGGGEVVNGHKNQNAHYTIECHGVTPVLEDMSQTKKVSSHWIRSCLEDDSLLDVGCHILYSPLPCHIPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFVNGPKYEAACKWGIQSVTSEWIFECVKQNKIVAVDEFLPKEVTAQDQEAGIFTVSQFPTQAAQILSGENSSQFSSRSQNLRNTPKHICSRVDNHEVDAKISSIYSKKARLLEEPDLYDMVPSAVDSVTHIYDPISAGDNMLKDNNEVPQAVPDVAAAIEDLLEQTSKVISADIFSLKSPGKTETEQSVSLKIDFLIRLSSRNENNDDASPRAGIYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMA 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2869 958 Gene3D BRCT domain 662 763 IPR036420 -
Sto9g2869 958 SUPERFAMILY BRCT domain 384 467 IPR036420 -
Sto9g2869 958 SUPERFAMILY BRCT domain 564 652 IPR036420 -
Sto9g2869 958 SMART BRCT_7 386 466 IPR001357 -
Sto9g2869 958 SMART BRCT_7 564 640 IPR001357 -
Sto9g2869 958 SMART BRCT_7 4 85 IPR001357 -
Sto9g2869 958 SMART BRCT_7 660 736 IPR001357 -
Sto9g2869 958 SMART BRCT_7 96 202 IPR001357 -
Sto9g2869 958 Gene3D BRCT domain 374 471 IPR036420 -
Sto9g2869 958 Gene3D BRCT domain 559 656 IPR036420 -
Sto9g2869 958 SUPERFAMILY BRCT domain 626 747 IPR036420 -
Sto9g2869 958 CDD BRCT_TopBP1_rpt2_like 661 736 - -
Sto9g2869 958 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 946 - -
Sto9g2869 958 CDD BRCT 102 198 - -
Sto9g2869 958 Gene3D BRCT domain 38 93 IPR036420 -
Sto9g2869 958 Pfam BRCA1 C Terminus (BRCT) domain 386 462 IPR001357 -
Sto9g2869 958 SUPERFAMILY BRCT domain 98 212 IPR036420 -
Sto9g2869 958 CDD BRCT_TopBP1_rpt3 383 467 - -
Sto9g2869 958 Gene3D BRCT domain 217 284 IPR036420 -
Sto9g2869 958 ProSiteProfiles BRCT domain profile. 663 746 IPR001357 -
Sto9g2869 958 Pfam BRCT domain, a BRCA1 C-terminus domain 564 645 IPR001357 -
Sto9g2869 958 ProSiteProfiles BRCT domain profile. 99 212 IPR001357 -
Sto9g2869 958 Pfam twin BRCT domain 103 152 IPR001357 -
Sto9g2869 958 Pfam twin BRCT domain 667 728 IPR001357 -
Sto9g2869 958 Gene3D BRCT domain 97 216 IPR036420 -
Sto9g2869 958 ProSiteProfiles BRCT domain profile. 217 281 IPR001357 -
Sto9g2869 958 ProSiteProfiles BRCT domain profile. 562 650 IPR001357 -
Sto9g2869 958 ProSiteProfiles BRCT domain profile. 384 462 IPR001357 -
Sto9g2869 958 SUPERFAMILY BRCT domain 185 282 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2869 1 958 Core DNA Replication Machinery Family AT1G77320 48.585 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2869 K10728 - gmx:100804966 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2869 9 30117875 30126066 Sto9g2869 9 30117875 30126066 ECH