Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2865 ATGGGGAGGGGTAAGATTGAGATAAAGAGGATTGAGAACTCAAACAACAGGCAAGTGACCTATTCAAAGAGGAAGACTGGGATCCTTAAGAAGGCGAGGGAAATTACTGTTCTATGCGATGCTCAACTTTCTCTTATTATCTTTGCTGCTTCTGGAAAGATGCATGAATACATCAGCCCTTCTACCacGCTGATTGACATCCTGGAGAGATACCACAAAACGTCGGGGAAGAAGCTGTGGGATGCTAAGCATGAGgatctaAATAGCGAAATTGATAgaatgaagaaagagaatgacaACATGCAAATTGAGCTAAGGCACTTGAAGGGGGAGGATATTAACTCACTTAATTACAAGGAGCTCATGACCTTAGAGGAAGCCTTAGAATGTGGCCTTACTGGTGTCCGCGACAAACGGGTATAA 423 0.409 MGRGKIEIKRIENSNNRQVTYSKRKTGILKKAREITVLCDAQLSLIIFAASGKMHEYISPSTTLIDILERYHKTSGKKLWDAKHEDLNSEIDRMKKENDNMQIELRHLKGEDINSLNYKELMTLEEALECGLTGVRDKRV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2865 140 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto9g2865 140 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto9g2865 140 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto9g2865 140 ProSiteProfiles K-box domain profile. 84 140 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto9g2865 140 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto9g2865 140 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto9g2865 140 Pfam K-box region 82 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto9g2865 140 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto9g2865 140 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto9g2865 140 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Sto9g2865 140 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Sto9g2865 140 Coils Coil 77 111 - -
Sto9g2865 140 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Sto9g2865 140 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 139 - -
Sto9g2865 140 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2865 Sto-Chr9 30088879 30090298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2865 1 140 MADS-box Gene Family AT5G20240 67.857 1.01e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto9g2865 K-box 9.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2865 K09264 - gmx:100817554 246.514