Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2862 ATGTCACATTATTCGCCAATTGATAGGCTTAGGTATAATTTAGATGATAGATCGGTGTTAAGAATGGAACACATTGATCGCTACGAAACCAATACGAGGGGAGAGTTCGTGTGGGAGGATGATAAGAACTATTATCGCCGTGATAATTTTGCATCAAATCTTGATGTGTCTTCTAAAGGTTTTGGAGTTATATCTTGTCAGAGTATTGGAGGAAACTTGAACGATAGGAAAGTTTCTAGAAATTTGGACGATTCATACTTTGAATTGGTGAAAGCAAGAGGTGGCTATGGGatgaaaacagaaaagagagaaggaagCACTCCCGAGCTTGATTTTTCAGTTAAATCTAGATCTCTGGTGGCCGAGGCTATAGTGGCATCTTCAACTCATAATTCGAAGCCTCGAACTTATCATCGCAGAATTAGTAGTTTTTCTGCTTCCCTACCTATTGACAACAAATCAGAGGAGAATAGATCTTCGCCATCGATGGAACCTCTTTCCGATTGTTTCTATGGAAGTACATTGGATCCGACTATTGAAAATCAAGCTGATCCATCTAACAAGGAGGAGATCCAAGTTGAAGCATATGGTAGGAATATGACCAATTTGAATGCAAAGAGAATAGTATATTTAAAGCGCAAATTTAATCAGTTGGTTGCAACTTCAAATTCTTGTGATCTTTCCATATCTACTGATGGCTACTATAAGAGGAGAAAAAATCAATTTGTCGGAACTAAACTCAAAAGTCATATAAACAAGATATCTGTGATGGCCAAGGACACTGTAAATTCTCACAGGCAAGGGCGGCCTTATAAGGTTCTCTGCAACAACAAATTTAATAAGAAGCAGTCACATAAGGATGACAAATCCCCATCCTCTGCCTCTATCCGACCAAGGTTGGGTGCTAAAAGAGCTTACACCAAGAGATTAATTATAGGAAATGATGAATATGTCCAAGTTGGCAATGGTAATAAACTTATCAGAGACCAAAAGAAACGAACTCGGATGTTagctaataaaaaatttatatggagTCTACAAAATGCTGGTCAGGAGGGGTTGGCTAGAAACCAGTATTGTCAGTTTTATACTAGATTTGGGAAATGTAACAAGGATGATGGGAATTGTCCCTATATTCATGATTCCTCAGAAATCACCGTCTGTACCAAGTTTCTGAATGGTTTATGTCCTATTTCAGACTGCAAATTGACTCACAAGGTTATTACAGAGAGAATGCCAGATTGTTCATATTTTTTGCAAGGCTTATGCATAAACGGAAATTGCCCATATAGACACGTCAATGTGAACCCTAAGGCTTCTATTTGTGAAGGATTTTTGAGGGGTTATTGTGTCCATGGCATTGAGTGTCGGAAGAAGCACAGTTATATCTGTCCTACATTTGAAGCAACAGGAACCTGTACCCAAGGAACCAAATGCAAGCTTCATCACCCCAACAAACAAAGCAAAggaaaggaaaatatatatGGAAATCAAAGGAATAGTGGAGGGCGTTACTTCGGTTCTATGCCCAATGTTGTTTCTCAACCAGAGATGATGGTGGCTTTAGGACAATGTCAACAGTGTGATAATGGCCCTGAAGGAGAAGTTGCTGACTATGTCACCACTGATGTCAAAACTGCAGAAAACATTAGTCGAGCATGTGAGCAAGCATCATTGAGTGATAGCGATCCCATGGATTTACAAATGGATAATCTTGATCAACTTATAAAACCTGTTCGTATAATGAAAAAGGATTTCATGACATCCCTACAAGCTTAG 1779 0.3777 MSHYSPIDRLRYNLDDRSVLRMEHIDRYETNTRGEFVWEDDKNYYRRDNFASNLDVSSKGFGVISCQSIGGNLNDRKVSRNLDDSYFELVKARGGYGMKTEKREGSTPELDFSVKSRSLVAEAIVASSTHNSKPRTYHRRISSFSASLPIDNKSEENRSSPSMEPLSDCFYGSTLDPTIENQADPSNKEEIQVEAYGRNMTNLNAKRIVYLKRKFNQLVATSNSCDLSISTDGYYKRRKNQFVGTKLKSHINKISVMAKDTVNSHRQGRPYKVLCNNKFNKKQSHKDDKSPSSASIRPRLGAKRAYTKRLIIGNDEYVQVGNGNKLIRDQKKRTRMLANKKFIWSLQNAGQEGLARNQYCQFYTRFGKCNKDDGNCPYIHDSSEITVCTKFLNGLCPISDCKLTHKVITERMPDCSYFLQGLCINGNCPYRHVNVNPKASICEGFLRGYCVHGIECRKKHSYICPTFEATGTCTQGTKCKLHHPNKQSKGKENIYGNQRNSGGRYFGSMPNVVSQPEMMVALGQCQQCDNGPEGEVADYVTTDVKTAENISRACEQASLSDSDPMDLQMDNLDQLIKPVRIMKKDFMTSLQA 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2862 592 ProSiteProfiles Zinc finger C3H1-type profile. 409 435 IPR000571 GO:0046872
Sto9g2862 592 ProSiteProfiles Zinc finger C3H1-type profile. 436 463 IPR000571 GO:0046872
Sto9g2862 592 PANTHER CCCH ZINGC FINGER 147 286 - -
Sto9g2862 592 PANTHER CCCH ZINGC FINGER 285 584 - -
Sto9g2862 592 MobiDBLite consensus disorder prediction 279 298 - -
Sto9g2862 592 MobiDBLite consensus disorder prediction 148 167 - -
Sto9g2862 592 ProSiteProfiles Zinc finger C3H1-type profile. 354 383 IPR000571 GO:0046872
Sto9g2862 592 Gene3D - 436 498 - -
Sto9g2862 592 Gene3D - 381 435 - -
Sto9g2862 592 SMART c3hfinal6 409 434 IPR000571 GO:0046872
Sto9g2862 592 SMART c3hfinal6 436 462 IPR000571 GO:0046872
Sto9g2862 592 SMART c3hfinal6 383 407 IPR000571 GO:0046872
Sto9g2862 592 SMART c3hfinal6 463 485 IPR000571 GO:0046872
Sto9g2862 592 SMART c3hfinal6 355 382 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2862 Sto-Chr9 30059194 30062446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2862 360 489 C2H2 Transcription Factor Family AT2G32930 33.333 2.85e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto9g2862 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2862 - - lja:Lj0g3v0363599.2 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2862 9 30059194 30062446 Sto9g2862 9 30059194 30062446 ECH