Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2858 atggaaaatgaaaatggaattagCAATGTTGATAACACAGATTGTTCTGAAGCGGTTCAGTGCCGGAAGAGTGAAGCTGTAAATAATGGGGTTGCAGTTAGGAATGATGTTAACAGAGGGGTTCAGCGCTTGAAAAGTGAAGCTGTGAATAATGGGTTGGTAATTGCAAATGGGAATGATGTTGCTGAAGGGGACTCTGGAGAGGTAGAAAGGTTTAGAACTTACAAGAGGCGTAAGCATGTAAAGTTGAGTTCAGAAAGCAAAGCCCAAGAAGATTGCAAAACATACATGGAAGCTTCAAATCATATAGGAGACCAGGTTGATTATGGAGTACTTAGTAAGATTGTAGATACTAGGGTTGTAAAGGTATCTTGTAATGTAGCTGTAGGAAATTCTTCTGATAATTATTCACATGGACATTGGGGAAATGTTGTTCTAAAGCATTTGTATCAGTCATTAGGTGATGATAAAAGTGGCATAGAAGGATGCATGAGGGAAGCTCTCATGCGCCATTCTAAAATTAGTTGTGCCACTACTGTAAAGGAAACTTGTAAAATTGACCAAAATGAACAAGAACACTCGTTGCAATTTGAGGGGATGTCTCATACATTACAGAGGGAAGTTAATGGGCATGCAAACCACTTGCATAACGAATGTTCTAGTGAATCAGATGGCCCCAATGCAACTGAGATGTGTCAGCGTGCACTCTGTAATATCTTAGTCTCTGAGAAATTCAGTTCATTATGTAAGGTGCTAATAGAAAATTTCAAAGGAATGAAGCCTGAAAGTGTTTTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCGAGCTTATGAACAGTCACCTACACTTTTCTTGTCAGATATTCAACagGTTTGGAGAAAGCTTCAAGACACTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAATATGTCGAGAACTTTCTACTGTGAGCAGaCTGGAGTTTTAGTGGACAGCACATTCAAAGATGGAAAGCAAGAGGTTTTGCAGACTTTCCCTATTAATAATACACATGATATGTTCATTCTGGAAAAGCTCTGCCCTTTCAGTTTTGTTGGAACTTGGAACATCAGTACCAAATGTACTTCAATTCATATGGTAGTTTTTCttgagagaaatattataatgGTCTTTGAGATTTATTTTGCTCTTCTCATGTCAAAACAGTTCTGTAACCGGGAATCTGACTCACACATGAAACCAGAGCAGACAGAAGACTGCAGCATGCATAAAATTTGCACTTGCAGGCATTGTGGAGAGAAAGCAGATGGGGCTGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCACGTCTCCTGTATTGAGCCTGCTGTCAAAGAGATACCCTACAAAAGCTGGTATTGTGCCAAATGCACGGCTAGTGGAATTGGATCTCCACatgaaaattgtttggtatgtgaaAGGTTGAATGTCCCACAGACCCTGAACAACTTAGATTTTGATGAGGGCTTCCCTATAAATGAGGAAATACTTCATGAATTGGAAGAAAATTCAAATTGCACCTATGATGGGGCCCAAGCATCCAGAAGGGGGGAAAGCAACTGCAATTGCAAAATTTGTGGAAATGAAGTGGATAgtgaaagaatgaaaatttgTTTCCACTCCTTCTGCTCCAATAAATACTACCATGTAAGGTGTTTGACAAGTAAGCAGTTAAAATCATATGGTCCCTGTTGGTACTGCCCTTCTTGTTTATGCCAAGTCTGTTTCACCGATCGAGATGATGATCAGATTGTTCTCTGTGATGGCTGCGATCATGCATACCACATCTATTGCATGAAACCTCCACGGACATCTATCCCAAAAGGAAAATGGTTCTGCAGAAAATGTGATAAAGGGATCCAAGCAATACGCCAAGCAAAAAAGGCATACGAGAGTAACAAACAGAAAAAAACAAGTCAAGATGAATCAAAGCCTGGTGATAAGTTGGAAAAAAAATGGAACAATAAACATGGACGAGAATTGGAAAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAAGAGAACTTGGCTACAATCCATACACAGAGATAG 2109 0.3845 MENENGISNVDNTDCSEAVQCRKSEAVNNGVAVRNDVNRGVQRLKSEAVNNGLVIANGNDVAEGDSGEVERFRTYKRRKHVKLSSESKAQEDCKTYMEASNHIGDQVDYGVLSKIVDTRVVKVSCNVAVGNSSDNYSHGHWGNVVLKHLYQSLGDDKSGIEGCMREALMRHSKISCATTVKETCKIDQNEQEHSLQFEGMSHTLQREVNGHANHLHNECSSESDGPNATEMCQRALCNILVSEKFSSLCKVLIENFKGMKPESVFDFSVINSRLKERAYEQSPTLFLSDIQQVWRKLQDTGNEIVSLAKGLSNMSRTFYCEQTGVLVDSTFKDGKQEVLQTFPINNTHDMFILEKLCPFSFVGTWNISTKCTSIHMVVFLERNIIMVFEIYFALLMSKQFCNRESDSHMKPEQTEDCSMHKICTCRHCGEKADGADCLVCDSCEEIYHVSCIEPAVKEIPYKSWYCAKCTASGIGSPHENCLVCERLNVPQTLNNLDFDEGFPINEEILHELEENSNCTYDGAQASRRGESNCNCKICGNEVDSERMKICFHSFCSNKYYHVRCLTSKQLKSYGPCWYCPSCLCQVCFTDRDDDQIVLCDGCDHAYHIYCMKPPRTSIPKGKWFCRKCDKGIQAIRQAKKAYESNKQKKTSQDESKPGDKLEKKWNNKHGRELEKGGGMDMLLTAANTLNFEENLATIHTQR 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2858 702 Coils Coil 632 652 - -
Sto9g2858 702 SUPERFAMILY FYVE/PHD zinc finger 583 635 IPR011011 -
Sto9g2858 702 Gene3D - 369 472 - -
Sto9g2858 702 SUPERFAMILY FYVE/PHD zinc finger 417 470 IPR011011 -
Sto9g2858 702 Pfam PHD-finger 425 471 IPR019787 -
Sto9g2858 702 Pfam PHD-finger 584 630 IPR019787 -
Sto9g2858 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 526 635 IPR013083 -
Sto9g2858 702 PANTHER D4, ISOFORM A 143 693 - -
Sto9g2858 702 PANTHER HISTONE ACETYLTRANSFERASE 143 693 - -
Sto9g2858 702 MobiDBLite consensus disorder prediction 642 679 - -
Sto9g2858 702 SMART PHD_3 424 470 IPR001965 -
Sto9g2858 702 SMART PHD_3 534 583 IPR001965 -
Sto9g2858 702 SMART PHD_3 586 629 IPR001965 -
Sto9g2858 702 MobiDBLite consensus disorder prediction 642 676 - -
Sto9g2858 702 ProSiteProfiles Zinc finger PHD-type profile. 422 472 IPR019787 -
Sto9g2858 702 ProSiteProfiles Zinc finger PHD-type profile. 581 631 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2858 Sto-Chr9 30029495 30035367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2858 583 646 C2H2 Transcription Factor Family AT3G01460 48.438 3.79e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto9g2858 PHD 7.4e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2858 - - ming:122060610 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0352 5 2123978 2127693 Sto9g2858 9 30029495 30035367 CCT
Sto9g2858 9 30029495 30035367 Sto9g2858 9 30029495 30035367 ECH