Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2820 ATGGAGGATTGTTCAGCACCTAATGATCAGGACACCAATAAGACTAATTGCCCTCGTGGCCACTGGAGACCCGCTGAGGACGAGAAACTCCGCCAACTTGTTCAGCAATATGGTGCCCAGAATTGGAATTCAATAGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTTGATCCTAGGATAAACAGAAGGCCATTCacagaagaggaagaagagaggcTTCTTGCAGCTCACCGTATCCACGGGAACAAGTGGGCACTGATAGCTAGGCTTTTCCCGGGTCGAACCGATAACGCTGTGAAGAATCACTGGCACGTTATAATGGCACGCAAGCAAAGAGAGCAGTCCAAGTTATGTGGGAAGAGAACCTTCCAAGATATTCTTCTTCACCAtcctaacaataataataatattacattTGGCAGTGGCAGATTGTTTGAGTTCCGGAGTAATCTTGATAATAAAGATAGAATAATATTCCCAGATTCTTCTCATCatcatgataataataataattctgcTTCCGCTACTACTAGTTGTTGGAATTTTGCAAGCACCTCCTCCTCCAACGGTGCGGATTCATTCATTTCAAGGGAATTAGGCTCAGCTGCTACTGCTAGAGATCATCATCATTACTTGACAACTTCTCTTCTTCCCCTGCCCCATAATTACATGATGCTATCCTCTTCGTCAGCAGCCTCAGACGACAGATCATCATCATTTCTCTCCAGAATTTATAATCCAAAttcctcatcatcatcaaactTGTTGAGGAAGGGCATGGGCAGTAGTGGATTGGGAGTGTTTGTTGGTTGTGGTGGTGAGGGAATTATTAGGACCAATACTACAAAGACGACGCACTTAGGTGGTAGTGGTACTTTGTGTGATCACTCCAACACTACATTCACAAAGTTGCGAGAGAGAACAGAACTCACCAAAATCATTATACGACGCAGAGAAAGTGCGTGCGTGGAGGAGAAGTCTGCGTTGATggaattaatatatgtatatgaccaACGAATTTTCACTAGCCATAATTAA 1065 0.4 MEDCSAPNDQDTNKTNCPRGHWRPAEDEKLRQLVQQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRTFQDILLHHPNNNNNITFGSGRLFEFRSNLDNKDRIIFPDSSHHHDNNNNSASATTSCWNFASTSSSNGADSFISRELGSAATARDHHHYLTTSLLPLPHNYMMLSSSSAASDDRSSSFLSRIYNPNSSSSSNLLRKGMGSSGLGVFVGCGGEGIIRTNTTKTTHLGGSGTLCDHSNTTFTKLRERTELTKIIIRRRESACVEEKSALMELIYVYDQRIFTSHN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2820 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Sto9g2820 354 Pfam Myb-like DNA-binding domain 22 82 - -
Sto9g2820 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Sto9g2820 354 SUPERFAMILY Homeodomain-like 17 112 IPR009057 -
Sto9g2820 354 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Sto9g2820 354 PANTHER OS08G0435700 PROTEIN 10 244 - -
Sto9g2820 354 Gene3D - 73 139 - -
Sto9g2820 354 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Sto9g2820 354 SMART sant 70 118 IPR001005 -
Sto9g2820 354 SMART sant 18 67 IPR001005 -
Sto9g2820 354 MobiDBLite consensus disorder prediction 1 21 - -
Sto9g2820 354 CDD SANT 22 63 IPR001005 -
Sto9g2820 354 Gene3D - 19 70 - -
Sto9g2820 354 PANTHER MYB PROTEIN-RELATED 10 244 - -
Sto9g2820 354 CDD SANT 82 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2820 Sto-Chr9 29770735 29774403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2820 17 126 MYB Transcription Factor Family AT1G17950 83.636 1.54e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto9g2820 Myb_DNA-bind_6 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2820 K09422 - gmx:100817328 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2820 9 29770735 29774403 Sto5g0331 5 1983821 1989663 CCT
Sto9g2820 9 29770735 29774403 Sto9g2820 9 29770735 29774403 ECH