Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2781 ATGGATGACAGCTTTTCTGATATTCTTGATGACAAAGACTTTGGTGGAGACGACCTCTTTGCCATCTTGGAGAACCTAGACGACTTCACCGATTTCCCAGCTCCCATTGCTGGCTCAAAGGACAACGAGGAAACCTCAAGGTTGGTCTCCCAAAAGTCAACCTCTTCAAGTGCTCTTCAAGACTCTGAAGAAACCGAACTTGAAGCTGCTTCACCCAAAAGCAAGAGACAGAAGCTCACAAGGACAACATCGTCCGAGGAACCAAACCCAGATGGCCAACCAAGGGTATCTCACATTACCGTGGAACGCAACCGAAGAAAGCAAATGAATGAGCATTTGTCTGTCTTGAGGTCCCTTATGCCTAACTTTTATGTCAAACGAGGAGACCAAGCATCGATAATTGGAGGAGTGGTTGATTACATAAACGAGTTGCAGCAGGTTCTACAGTCCCTTGAAGCGAAGAAGCAAAGAAAAGTATACAGTGAAGTGCTAAGCCCAAGGCTAGTCTCAAGCCCAAGGCCTTCATCAGCACCCAGTCCTAGAAAACCACCAGTGAGCCCTAGGCTAAGCCTGCCCATTAGCCCAAGGACTCCACAGCCAGGCAGTCCTTACAAGCCCAGAATTCCAGGTCAAGCTCTCAAGATCATATCAGCCCTTGAAGACCTAGCGCTTGAAATCCTCCATGTCAGCATCAGCACTTCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTGAGTGCCGAAGAACTGGCTCAACAAATCCAGCAAACATTCTGCTGA 801 0.4707 MDDSFSDILDDKDFGGDDLFAILENLDDFTDFPAPIAGSKDNEETSRLVSQKSTSSSALQDSEETELEAASPKSKRQKLTRTTSSEEPNPDGQPRVSHITVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSEVLSPRLVSSPRPSSAPSPRKPPVSPRLSLPISPRTPQPGSPYKPRIPGQALKIISALEDLALEILHVSISTSDETMLNSFTIKIGIECQLSAEELAQQIQQTFC 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2781 266 Gene3D - 85 158 IPR036638 GO:0046983
Sto9g2781 266 PANTHER - 1 205 - -
Sto9g2781 266 PANTHER - 206 266 - -
Sto9g2781 266 MobiDBLite consensus disorder prediction 48 64 - -
Sto9g2781 266 MobiDBLite consensus disorder prediction 165 206 - -
Sto9g2781 266 CDD bHLH_AtFAMA_like 97 167 - -
Sto9g2781 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 144 IPR011598 GO:0046983
Sto9g2781 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 166 IPR036638 GO:0046983
Sto9g2781 266 MobiDBLite consensus disorder prediction 31 106 - -
Sto9g2781 266 MobiDBLite consensus disorder prediction 176 205 - -
Sto9g2781 266 MobiDBLite consensus disorder prediction 66 82 - -
Sto9g2781 266 SMART finulus 99 150 IPR011598 GO:0046983
Sto9g2781 266 Coils Coil 137 157 - -
Sto9g2781 266 Pfam Helix-loop-helix DNA-binding domain 95 145 IPR011598 GO:0046983
Sto9g2781 266 PANTHER TRANSCRIPTION FACTOR FAMA 1 205 IPR044283 GO:0003700|GO:0010052
Sto9g2781 266 PANTHER TRANSCRIPTION FACTOR FAMA 206 266 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2781 Sto-Chr9 29534508 29536115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2781 207 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 77.500 9.59e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto9g2781 HLH 6.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2781 K20558 - pop:18105680 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2781 9 29534508 29536115 Sto9g2781 9 29534508 29536115 ECH