LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g2770	ATGAATTTTCAGCATGAGAAATCTGTCAGGTTTCAGAATTGGGATTCAGAAAGGAGTAGTGAGAACCAATACCCTGTTGCAAGTAACATAATCCACTCGGGAAGAATTAGAACTTCGCTGAAGTCAGTTTCTCTGAAATTTCAAAGGGGCTTGGAATTTTCTGAGAGGATAAAGCGATTTAGAAATTCATTCAAATCTTTTTCCTCTGAAGGCTTACTGTCTAGAAAGAAGATCCTTGATCCACAGGGCTCATTCCTTCAAAAGTGGAACAAGATTTTTGTATTATCATGTATTATTGCTGTATCACTAgatcctttattcttttatgtcCCTGTACTTGATGATCAGAAGAAATGTCTTTCATTGGACCGCAAGATGGAGATTACAGCCACTGTTCTAAGATCTTTCTCTGATATTTTTTACATAATCCACATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTAAAGATGGTTGGGCCATCGCAAGGAGGTATCTTTCATCATACTTTTGGATTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATCTTGATTGTCATTCCAAGGTTACATGGCTTTGAATCGCTGAATACGAAAAACTTGCTAAAGTTTGTTGTTTTCTTCCAATATGTGCCGAGGCTTTTGCGAGTTGTTCCTCTATATAAAGAAATTACAAGAACCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTCAACCTTTTTCTTTACATGCTTGCAAGTCATATGCATATTCCAGAATGTTGGGCAAAATTAATCTTGGCAGTTGGCAAGATGCCATTCATGGATTTCATGATTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGACAAACCACTTGCTGGCAACGAGCCTGCAGAAGAAATACTACTTGTAGCAAAGCAGCTTTATATTGTGGTAATGATCAAGGGTCAGGCATTTTAAAATTCTTGAATGATTCTTGCCCACTACAAGAGGGAAGTACACAATTTGATTTTGGAATATTCCTTGATGCGCTTCAGTCTGGTGTTGGGGATTCAGGAGATTTTCCACAGAAGTTTTTTTACTGTTTTTGGTGGGGCCTAAGAAATCTGAGTTCTCTTGGTCAGAACCTGCAAACAAGTACATATGTTTGGGAAATCTTATTTGCTGTTGCCATTTCCATCGTTGGCTTggtattattttcatttctcaTCGGAAATATGCAGACATATCTGCAGTCAACAACTACAAGATTAGAGGAGATGAGAGTGAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGGTTGCTTCCTGATAGTCTGAGAGAGCGAATCAGACGTCATGAACAATATAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAACTTGATCCGTAATCTACCCAAGGATTTGAGAAGGGACATTAAGCGTCATCTCTGCTTGGCTCTGCTTATGAGAGTGCCCATATTTGAGAAAATGGATGAACAATTACTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTTTACACAGAAGAGAGCTGCATTGTTCGGGAAGGAGACCCGGTGGACGAGATGCTCTTCATAATGCGAGGGAAGCTATTGACAGTGACAACTAATGGTGGAAGAACAGGCTTCTTTAACTCGGAATTCCTCAAAGGTGGTGACTTCTGTGGAGAGGAACTTCTCACATGGGCATTAGACCCACATTCGTCATCCAACCTTCCTACCTCAACTAGGACTGTGCAAACCCTTTCAGAAGTTGAAGCCTTTGCTCTAAAAGCTGATGACTTGAAGTTTGTGGCATCTCAATTCCGACGCCTTCACAGTAAGCAGCTTCGTCACACATTCAGGTTCTACTCCCAACAATGGCGTACATGGGCGGCATGTTTCATACAAGCAGCCTGGCGGCGATACAGTAAAAAGAAGCTCGAAGAGTCTCTCAGGGAAGAGGAGAGTAGGCTGCAAGACGCATTGGCCAGAGCAGGTGGTAGCTCACCAAGTCTGGGTGCTACAATATATGCATCCAGATTTGCTGCAAATGCACTTCGAGTTTTGCGTCGTAACGGCACGAGGAAGACAAGGGCGCAGGAAAGATTACCACCCATGTTGCTTCAGAAGCCTGCAGAACCTGACTTTACTGCGGATGAGAAATAG	2196	0.4171	MNFQHEKSVRFQNWDSERSSENQYPVASNIIHSGRIRTSLKSVSLKFQRGLEFSERIKRFRNSFKSFSSEGLLSRKKILDPQGSFLQKWNKIFVLSCIIAVSLDPLFFYVPVLDDQKKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVKDGWAIARRYLSSYFWIDILAVLPLPQVVILIVIPRLHGFESLNTKNLLKFVVFFQYVPRLLRVVPLYKEITRTSGILTETAWAGAAFNLFLYMLASHMHIPECWAKLILAVGKMPFMDFMIIGAFWYLFSIERQTTCWQRACRRNTTCSKAALYCGNDQGSGILKFLNDSCPLQEGSTQFDFGIFLDALQSGVGDSGDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEILFAVAISIVGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKGGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEESRLQDALARAGGSSPSLGATIYASRFAANALRVLRRNGTRKTRAQERLPPMLLQKPAEPDFTADEK	731

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g2770	731	MobiDBLite	consensus disorder prediction	703	731	-	-
	Sto9g2770	731	SMART	cnmp_10	502	633	IPR000595	-
	Sto9g2770	731	Pfam	Ion transport protein	89	429	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Sto9g2770	731	ProSiteProfiles	cAMP/cGMP binding motif profile.	502	586	IPR000595	-
	Sto9g2770	731	Pfam	Cyclic nucleotide-binding domain	523	613	IPR000595	-
	Sto9g2770	731	Gene3D	Helix hairpin bin	428	493	-	-
	Sto9g2770	731	Gene3D	Jelly Rolls	500	620	IPR014710	-
	Sto9g2770	731	CDD	CAP_ED	502	633	IPR000595	-
	Sto9g2770	731	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	6	266	-	-
	Sto9g2770	731	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	288	729	-	-
	Sto9g2770	731	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	6	266	-	-
	Sto9g2770	731	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	288	729	-	-
	Sto9g2770	731	Gene3D	-	91	426	-	-
	Sto9g2770	731	SUPERFAMILY	cAMP-binding domain-like	431	624	IPR018490	-
	Sto9g2770	731	SUPERFAMILY	Voltage-gated potassium channels	80	424	-	-
	Sto9g2770	731	Coils	Coil	654	674	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g2770	Sto-Chr9	29453917	29459255	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g2770	1	730	Ion Channels	AT5G53130	74.595	0.0	1100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto9g2770	K05391		-	gmx:100815774	1166.76